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Dynlt2a2 dynein light chain Tctex-type 2A2 [ Mus musculus (house mouse) ]

Gene ID: 100041639, updated on 27-Nov-2024

Summary

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Official Symbol
Dynlt2a2provided by MGI
Official Full Name
dynein light chain Tctex-type 2A2provided by MGI
Primary source
MGI:MGI:3809205
See related
Ensembl:ENSMUSG00000079710 AllianceGenome:MGI:3809205
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
LC2; Tcte3; Dynlt2; Gm3448; Tcte-3; Tctex2; Tctex4; Dynlt2b; TCTEX-2; TCTEX-4; Tctex1d3
Summary
This gene is one of three genes with a very high degree of similarity to each other within a 77 kb genomic span on Chromosome 17 A2. This gene lies between the other two gene copies. [provided by RefSeq, Jul 2008]
Expression
Restricted expression toward testis adult (RPKM 459.3) See more
Orthologs
human all
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Genomic context

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See Dynlt2a2 in Genome Data Viewer
Location:
17 A2; 17 8.95 cM
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 17 NC_000083.7 (15216045..15230446, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 17 NC_000083.6 (14995783..15010184, complement)

Chromosome 17 - NC_000083.7Genomic Context describing neighboring genes Neighboring gene dynein light chain Tctex-type 2A3 Neighboring gene ER membrane associated RNA degradation like 2 Neighboring gene STARR-seq mESC enhancer starr_41898 Neighboring gene predicted gene 3255 Neighboring gene ER membrane associated RNA degradation like 1 Neighboring gene dynein light chain Tctex-type 2A1 Neighboring gene STARR-seq mESC enhancer starr_41899 Neighboring gene predicted gene, 52298 Neighboring gene ER membrane associated RNA degradation Neighboring gene predicted gene, 53990

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
t-complex-associated testis expressed 3-like
Names
T-complex testis-specific protein 2
T-complex testis-specific protein 3
T-complex-associated testis-expressed protein 3
T-complex-associated testis-expressed protein 4
Tctex1 domain-containing protein 3
dynein light chain Tctex-type 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001123367.1 → NP_001116839.1  t-complex-associated testis expressed 3-like isoform 1

    See identical proteins and their annotated locations for NP_001116839.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) encodes the longer isoform (1).
    Source sequence(s)
    AC182749
    Consensus CDS
    CCDS49961.1
    UniProtKB/TrEMBL
    A0A0R4J284
    Related
    ENSMUSP00000137218.2, ENSMUST00000179539.9
    Conserved Domains (1) summary
    pfam03645
    Location:94 → 189
    Tctex-1; Tctex-1 family

  2. NM_001360662.1 → NP_001347591.1  t-complex-associated testis expressed 3-like isoform 2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an alternate in-frame exon in the 3' coding region, compared to variant 1. It encodes isoform 2 which is shorter, compared to isoform 1.
    Source sequence(s)
    AC182749
    Conserved Domains (1) summary
    pfam03645
    Location:37 → 137
    Tctex-1; Tctex-1 family

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000083.7 Reference GRCm39 C57BL/6J

    Range
    15216045..15230446 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

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