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Gm15427 predicted pseudogene 15427 [ Mus musculus (house mouse) ]

Gene ID: 100041686, updated on 17-Aug-2024

Summary

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Official Symbol
Gm15427provided by MGI
Official Full Name
predicted pseudogene 15427provided by MGI
Primary source
MGI:MGI:3642341
See related
Ensembl:ENSMUSG00000081051 AllianceGenome:MGI:3642341
Gene type
pseudo
RefSeq status
INFERRED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
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Genomic context

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See Gm15427 in Genome Data Viewer
Location:
1 D; 1 47.76 cM
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 1 NC_000067.7 (95426296..95426912)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 1 NC_000067.6 (95498571..95499187)

Chromosome 1 - NC_000067.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_01755 Neighboring gene predicted gene 5264 Neighboring gene STARR-positive B cell enhancer mm9_chr1:97209938-97210239 Neighboring gene family with sequence similarity 174, member A Neighboring gene STARR-positive B cell enhancer ABC_E5784 Neighboring gene STARR-positive B cell enhancer ABC_E3292 Neighboring gene STARR-seq mESC enhancer starr_01756 Neighboring gene STARR-seq mESC enhancer starr_01757 Neighboring gene U7 small nuclear RNA, pseudogene 2 Neighboring gene STARR-positive B cell enhancer ABC_E987 Neighboring gene STARR-positive B cell enhancer ABC_E11079 Neighboring gene STARR-positive B cell enhancer ABC_E10023 Neighboring gene STARR-positive B cell enhancer mm9_chr1:97507476-97507777 Neighboring gene ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 Neighboring gene STARR-positive B cell enhancer mm9_chr1:97515913-97516213 Neighboring gene STARR-positive B cell enhancer ABC_E11080 Neighboring gene STARR-positive B cell enhancer ABC_E1225 Neighboring gene STARR-positive B cell enhancer ABC_E10024 Neighboring gene CapStarr-seq enhancer MGSCv37_chr1:97562784-97562967 Neighboring gene STARR-positive B cell enhancer ABC_E7736 Neighboring gene CapStarr-seq enhancer MGSCv37_chr1:97564187-97564374 Neighboring gene predicted gene, 30431

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A large-scale, gene-driven mutagenesis approach for the functional analysis of the mouse genome. Hansen J, et al. Proc Natl Acad Sci U S A, 2003 Aug 19. PMID 12904583, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_030470.2 

    Range
    101..717
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000067.7 Reference GRCm39 C57BL/6J

    Range
    95426296..95426912
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001111116.1: Suppressed sequence

    Description
    NM_001111116.1: This RefSeq was permanently suppressed because it is now thought that this gene is a pseudogene.
Nucleotide Protein Strain
Heading Accession and Version

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