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4930522L14Rik RIKEN cDNA 4930522L14 gene [ Mus musculus (house mouse) ]

Gene ID: 100041734, updated on 27-Nov-2024

Summary

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Official Symbol
4930522L14Rikprovided by MGI
Official Full Name
RIKEN cDNA 4930522L14 geneprovided by MGI
Primary source
MGI:MGI:1925270
See related
Ensembl:ENSMUSG00000072762 Ensembl:ENSMUSG00000121595 AllianceGenome:MGI:1925270
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm42152
Summary
Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. [provided by Alliance of Genome Resources, Nov 2024]
Expression
Low expression observed in reference dataset See more
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Genomic context

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See 4930522L14Rik in Genome Data Viewer
Location:
5 F; 5 53.26 cM
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (109845026..109899559, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (109735515..109796569, complement)

Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene vomeronasal 2, receptor, pseudogene 22 Neighboring gene vomeronasal 2, receptor, pseudogene 23 Neighboring gene STARR-seq mESC enhancer starr_13919 Neighboring gene zinc finger protein 1007 Neighboring gene STARR-positive B cell enhancer ABC_E9649 Neighboring gene STARR-seq mESC enhancer starr_13923 Neighboring gene STARR-seq mESC enhancer starr_13924 Neighboring gene golgin subfamily A member 7 pseudogene Neighboring gene STARR-seq mESC enhancer starr_13926 Neighboring gene zinc finger protein pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article
  2. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
  3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

See all (11) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IBA
Inferred from Biological aspect of Ancestor
more info
  
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
uncharacterized protein LOC100041734

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001378567.1 → NP_001365496.1  uncharacterized protein LOC100041734 isoform 1

    Status: VALIDATED

    Source sequence(s)
    AC162689
    UniProtKB/TrEMBL
    E9QAG4
    Related
    ENSMUSP00000108166.2, ENSMUST00000112547.9

  2. NM_001378568.1 → NP_001365497.1  uncharacterized protein LOC100041734 isoform 2

    Status: VALIDATED

    Source sequence(s)
    AC162689

  3. NM_001378570.1 → NP_001365499.1  uncharacterized protein LOC100041734 isoform 3

    Status: VALIDATED

    Source sequence(s)
    AC116718, AC162689
    Related
    ENSMUST00000249386.1

  4. NM_001378581.1 → NP_001365510.1  uncharacterized protein LOC100041734 isoform 4

    Status: VALIDATED

    Source sequence(s)
    AC162689, AK019690
    UniProtKB/TrEMBL
    Q8C1G8
    Related
    ENSMUSP00000098497.4, ENSMUST00000100937.5

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000071.7 Reference GRCm39 C57BL/6J

    Range
    109845026..109899559 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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