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AI463229 expressed sequence AI463229 [ Mus musculus (house mouse) ]

Gene ID: 100042802, updated on 22-Oct-2024

Summary

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Official Symbol
AI463229provided by MGI
Official Full Name
expressed sequence AI463229provided by MGI
Primary source
MGI:MGI:2145255
See related
Ensembl:ENSMUSG00000114828 AllianceGenome:MGI:2145255
Gene type
ncRNA
RefSeq status
MODEL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
9130430E04
Expression
Low expression observed in reference dataset See more
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Genomic context

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See AI463229 in Genome Data Viewer
Location:
13 A3.3; 13 17.61 cM
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 13 NC_000079.7 (37840989..37851711, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 13 NC_000079.6 (37657013..37667735, complement)

Chromosome 13 - NC_000079.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 40916 Neighboring gene STARR-positive B cell enhancer ABC_E7225 Neighboring gene predicted gene, 40917 Neighboring gene STARR-seq mESC enhancer starr_34221 Neighboring gene STARR-seq mESC enhancer starr_34225 Neighboring gene predicted gene, 40918 Neighboring gene STARR-seq mESC enhancer starr_34227 Neighboring gene predicted gene, 31600

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  2. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  3. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
  4. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article
  5. Functional annotation of a full-length mouse cDNA collection. Kawai J, et al. Nature, 2001 Feb 8. PMID 11217851

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000079.7 Reference GRCm39 C57BL/6J

    Range
    37840989..37851711 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_382206.3 RNA Sequence

    Related
    ENSMUST00000357751.1

  2. XR_873256.2 RNA Sequence

    Related
    ENSMUST00000225013.3

  3. XR_382207.3 RNA Sequence

    Related
    ENSMUST00000357753.1

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_183203.1: Suppressed sequence

    Description
    NM_183203.1: This RefSeq was permanently suppressed because it is now thought that this gene does not encode a protein.
Nucleotide Protein Strain
Heading Accession and Version

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