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LOC100128076 protein tyrosine phosphatase receptor type H pseudogene [ Homo sapiens (human) ]

Gene ID: 100128076, updated on 10-Dec-2024

Summary

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Gene symbol
LOC100128076
Gene description
protein tyrosine phosphatase receptor type H pseudogene
Gene type
pseudo
RefSeq status
PROVISIONAL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC100128076 in Genome Data Viewer
Location:
9q22.31
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (92132834..92138629)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (104299316..104305121)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 9 NC_000009.11 (94895116..94900911)

Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene serine palmitoyltransferase long chain base subunit 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28589 Neighboring gene MT-ND3 pseudogene 23 Neighboring gene MT-ND4L pseudogene 7 Neighboring gene MT-ND4 pseudogene 15 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:94896185-94896816 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:94902296-94902875 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:94903455-94904034 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:94904035-94904613 Neighboring gene small nucleolar RNA U13 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr9:94909356-94910555 Neighboring gene long intergenic non-protein coding RNA 475 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20030 Neighboring gene BEN domain containing 3 pseudogene 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Tissue-specific circular RNA induction during human fetal development
  • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
  • BioProject: PRJNA270632
  • Publication: PMID 26076956
  • Analysis date: Mon Apr 2 22:54:59 2018

Bibliography

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Related articles in PubMed

  1. Cloning of hOST-PTP: the only example of a protein-tyrosine-phosphatase the function of which has been lost between rodent and human. Cousin W, et al. Biochem Biophys Res Commun, 2004 Aug 13. PMID 15358244
  2. A genomic perspective on protein tyrosine phosphatases: gene structure, pseudogenes, and genetic disease linkage. Andersen JN, et al. FASEB J, 2004 Jan. PMID 14718383
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Other Names

  • protein tyrosine phosphatase pseudogene

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_015444.1 RNA Sequence

    Status: PROVISIONAL

    Source sequence(s)
    AY786555

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

    Range
    92132834..92138629
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060933.1 Alternate T2T-CHM13v2.0

    Range
    104299316..104305121
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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