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LOC100132773 serine/threonine-protein phosphatase 4 regulatory subunit 2-like [ Homo sapiens (human) ]

Gene ID: 100132773, updated on 10-Dec-2024

Summary

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Gene symbol
LOC100132773
Gene description
serine/threonine-protein phosphatase 4 regulatory subunit 2-like
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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See LOC100132773 in Genome Data Viewer
Location:
5p15.33
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (1614609..1614948)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (1528889..1529228)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (1614724..1615063)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107986397 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:1550004-1550504 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:1565824-1566805 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:1575932-1576432 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:1576433-1576933 Neighboring gene SDHA pseudogene 3 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:1592875-1593376 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:1593377-1593876 Neighboring gene Sharpr-MPRA regulatory region 3968 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:1603671-1604172 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:1607451-1607950 Neighboring gene PDCD6 pseudogene 1 Neighboring gene uncharacterized LOC112267946 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15886 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:1642325-1642877 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:1642878-1643429 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:1643470-1644132 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15887 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:1701759-1702392 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:1703601-1704100 Neighboring gene uncharacterized LOC105374614 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:1707249-1707750 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:1707751-1708250 Neighboring gene ReSE screen-validated silencer GRCh37_chr5:1708852-1709007 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:1708971-1709534 Neighboring gene microRNA 4277

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Markers

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_028897.3 

    Range
    101..440
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

    Range
    1614609..1614948
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060929.1 Alternate T2T-CHM13v2.0

    Range
    1528889..1529228
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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