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Cat catalase [ Cavia porcellus (domestic guinea pig) ]

Gene ID: 100135492, updated on 8-Mar-2024

Summary

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Gene symbol
Cat
Gene description
catalase
See related
Ensembl:ENSCPOG00000012582
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Cavia porcellus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Caviidae; Cavia
Annotation information
Annotation category: partial on reference assembly
Orthologs
human mouse all
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Genomic context

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See Cat in Genome Data Viewer
Location:
chromosome: Un
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2024_02 current mCavPor4.1 (GCF_034190915.1) Unplaced Scaffold NW_026947500.1 (32741884..32789041)
RS_2024_02 current mCavPor4.1 (GCF_034190915.1) Unplaced Scaffold NW_026947515.1 (36391928..36392217)
103 previous assembly Cavpor3.0 (GCF_000151735.1) Unplaced Scaffold NT_176327.1 (4314413..4358459, complement)
103 previous assembly Cavpor3.0 (GCF_000151735.1) Unplaced Scaffold NT_176358.1 (9620222..9620511, complement)

NW_026947515.1Genomic Context describing neighboring genes Neighboring gene major facilitator superfamily domain-containing protein 8-like Neighboring gene uncharacterized LOC106026876 Neighboring gene arachidonate 12-lipoxygenase, 12S type Neighboring gene BPTF associated chromatin complex component 1 Neighboring gene BCL6B transcription repressor

NW_026947500.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC134470932 Neighboring gene small nucleolar RNA SNORA2/SNORA34 family Neighboring gene E74 like ETS transcription factor 5 Neighboring gene uncharacterized LOC134470933 Neighboring gene ETS homologous factor

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Differential patterns of antioxidant enzyme mRNA expression in guinea pig lung and liver during development. Yuan HT, et al. Biochim Biophys Acta, 1996 Mar 1. PMID 8597602
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables catalase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables heme binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in hydrogen peroxide catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in response to hydrogen peroxide IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in peroxisome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
catalase
Names
major intrinsic protein of eye lens fiber
NP_001166396.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001172925.1 → NP_001166396.1  catalase

    See identical proteins and their annotated locations for NP_001166396.1

    Status: PROVISIONAL

    Source sequence(s)
    AJ005111
    UniProtKB/Swiss-Prot
    Q64405, Q9QZ51
    UniProtKB/TrEMBL
    H0VLR7
    Related
    ENSCPOP00000011320.2, ENSCPOT00000012703.3
    Conserved Domains (2) summary
    cd08156
    Location:68 → 497
    catalase_clade_3; Clade 3 of the heme-binding enzyme catalase
    COG0753
    Location:26 → 493
    KatE; Catalase [Inorganic ion transport and metabolism]

RefSeqs of Annotated Genomes: GCF_034190915.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCavPor4.1

Genomic

  1. NW_026947500.1 Reference mCavPor4.1

    Range
    32741884..32789041
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference mCavPor4.1

Genomic

  1. NW_026947515.1 Reference mCavPor4.1

    Range
    36391928..36392217
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q64405.4 GenPept UniProtKB/Swiss-Prot:Q64405

Gene LinkOut

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