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si:ch73-237c6.1 si:ch73-237c6.1 [ Danio rerio (zebrafish) ]

Gene ID: 100149189, updated on 4-Jan-2025

Summary

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Official Symbol
si:ch73-237c6.1provided by ZNC
Official Full Name
si:ch73-237c6.1provided by ZNC
Primary source
ZFIN:ZDB-GENE-081105-55
See related
Ensembl:ENSDARG00000078114 AllianceGenome:ZFIN:ZDB-GENE-081105-55
Gene type
protein coding
RefSeq status
PREDICTED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
fj21f04; wu:fj21f04
Summary
Human ortholog(s) of this gene implicated in X-linked properdin deficiency. Orthologous to human CFP (complement factor properdin). [provided by Alliance of Genome Resources, Jan 2025]
Orthologs
all
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Genomic context

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See si:ch73-237c6.1 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 8 NC_007119.7 (23689992..23702297, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 8 NC_007119.6 (23668753..23681078, complement)

Chromosome 8 - NC_007119.7Genomic Context describing neighboring genes Neighboring gene transfer RNA arginine (anticodon ACG) Neighboring gene complement factor properdin Neighboring gene peroxisome proliferator-activated receptor delta b Neighboring gene makorin, ring finger protein, 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  2. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

General protein information

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Preferred Names
uncharacterized protein LOC100149189
Names
complement factor properdin

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001113579.1 → NP_001107051.1  uncharacterized protein LOC100149189 precursor

    See identical proteins and their annotated locations for NP_001107051.1

    Status: PREDICTED

    Source sequence(s)
    BX469917, CU302443
    UniProtKB/TrEMBL
    A0A8M1NF67, A9C4A2
    Conserved Domains (3) summary
    smart00209
    Location:127 → 179
    TSP1; Thrombospondin type 1 repeats
    pfam00090
    Location:72 → 120
    TSP_1; Thrombospondin type 1 domain
    cl15278
    Location:362 → 437
    TSP_1; Thrombospondin type 1 domain

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007119.7 Reference GRCz11 Primary Assembly

    Range
    23689992..23702297 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005166985.5 → XP_005167042.1  uncharacterized protein LOC100149189 isoform X1

    See identical proteins and their annotated locations for XP_005167042.1

    UniProtKB/TrEMBL
    A0A8M1NF67, A9C4A2
    Related
    ENSDARP00000119415.2, ENSDART00000139897.3
    Conserved Domains (3) summary
    smart00209
    Location:127 → 179
    TSP1; Thrombospondin type 1 repeats
    pfam00090
    Location:72 → 120
    TSP_1; Thrombospondin type 1 domain
    cl15278
    Location:362 → 437
    TSP_1; Thrombospondin type 1 domain

  2. XM_005166984.5 → XP_005167041.1  uncharacterized protein LOC100149189 isoform X1

    See identical proteins and their annotated locations for XP_005167041.1

    UniProtKB/TrEMBL
    A0A8M1NF67, A9C4A2
    Conserved Domains (3) summary
    smart00209
    Location:127 → 179
    TSP1; Thrombospondin type 1 repeats
    pfam00090
    Location:72 → 120
    TSP_1; Thrombospondin type 1 domain
    cl15278
    Location:362 → 437
    TSP_1; Thrombospondin type 1 domain
Nucleotide Protein
Heading Accession and Version

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