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LIPM lipase family member M [ Sus scrofa (pig) ]

Gene ID: 100153843, updated on 17-Aug-2024

Summary

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Official Symbol
LIPMprovided by VGNC
Official Full Name
lipase family member Mprovided by VGNC
Primary source
VGNC:VGNC:89742
See related
Ensembl:ENSSSCG00000010444
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Broad expression in lung (RPKM 3.9), spleen (RPKM 2.7) and 5 other tissues See more
Orthologs
human all
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Genomic context

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See LIPM in Genome Data Viewer
Location:
chromosome: 14
Exon count:
10
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 14 NC_010456.5 (100716038..100748916)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 14 NC_010456.4 (109700870..109732335)

Chromosome 14 - NC_010456.5Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110256748 Neighboring gene lipase member K Neighboring gene lipase member N Neighboring gene ankyrin repeat domain 22 Neighboring gene STAM binding protein like 1 Neighboring gene actin alpha 2, smooth muscle

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hydrolase activity, acting on ester bonds IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
lipase member M

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010456.5 Reference Sscrofa11.1 Primary Assembly

    Range
    100716038..100748916
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013983531.2 → XP_013838985.1  lipase member M isoform X2

    Conserved Domains (3) summary
    PLN02872
    Location:42 → 407
    PLN02872; triacylglycerol lipase
    pfam04083
    Location:41 → 103
    Abhydro_lipase; Partial alpha/beta-hydrolase lipase region
    pfam12695
    Location:85 → 223
    Abhydrolase_5; Alpha/beta hydrolase family

  2. XM_013983529.2 → XP_013838983.1  lipase member M isoform X1

    UniProtKB/TrEMBL
    A0A4X1V5I0, A0A8D0NX33, F1SCZ0
    Conserved Domains (3) summary
    PLN02872
    Location:50 → 415
    PLN02872; triacylglycerol lipase
    pfam04083
    Location:49 → 111
    Abhydro_lipase; Partial alpha/beta-hydrolase lipase region
    pfam12695
    Location:93 → 231
    Abhydrolase_5; Alpha/beta hydrolase family

  3. XM_013983533.2 → XP_013838987.1  lipase member M isoform X3

    Conserved Domains (3) summary
    PLN02872
    Location:15 → 380
    PLN02872; triacylglycerol lipase
    pfam04083
    Location:14 → 76
    Abhydro_lipase; Partial alpha/beta-hydrolase lipase region
    pfam12695
    Location:58 → 196
    Abhydrolase_5; Alpha/beta hydrolase family

  4. XM_001928440.4 → XP_001928475.1  lipase member M isoform X1

    UniProtKB/TrEMBL
    A0A4X1V5I0, A0A8D0NX33, F1SCZ0
    Related
    ENSSSCP00000011132.2, ENSSSCT00000011429.4
    Conserved Domains (3) summary
    PLN02872
    Location:50 → 415
    PLN02872; triacylglycerol lipase
    pfam04083
    Location:49 → 111
    Abhydro_lipase; Partial alpha/beta-hydrolase lipase region
    pfam12695
    Location:93 → 231
    Abhydrolase_5; Alpha/beta hydrolase family
Nucleotide Protein
Heading Accession and Version

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