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LRRC8A leucine rich repeat containing 8 VRAC subunit A [ Sus scrofa (pig) ]

Gene ID: 100157556, updated on 17-Aug-2024

Summary

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Official Symbol
LRRC8Aprovided by VGNC
Official Full Name
leucine rich repeat containing 8 VRAC subunit Aprovided by VGNC
Primary source
VGNC:VGNC:98085
See related
Ensembl:ENSSSCG00000005664
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in lung (RPKM 19.4), subcutaneous adipose (RPKM 12.6) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See LRRC8A in Genome Data Viewer
Location:
chromosome: 1
Exon count:
7
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 1 NC_010443.5 (269209660..269238529)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 1 NC_010443.4 (303258058..303270700)

Chromosome 1 - NC_010443.5Genomic Context describing neighboring genes Neighboring gene endonuclease G Neighboring gene SPOUT domain containing methyltransferase 1 Neighboring gene kynurenine aminotransferase 1 Neighboring gene phytanoyl-CoA dioxygenase domain containing 1 Neighboring gene dolichol kinase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
  2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
volume-regulated anion channel subunit LRRC8A
Names
leucine rich repeat containing 8 family member A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010443.5 Reference Sscrofa11.1 Primary Assembly

    Range
    269209660..269238529
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001928850.6 → XP_001928885.1  volume-regulated anion channel subunit LRRC8A

    See identical proteins and their annotated locations for XP_001928885.1

    UniProtKB/TrEMBL
    A0A4X1TJT1, A0A8D0XBM4, A0A8D1SUF8, F1RR61

  2. XM_013993913.2 → XP_013849367.1  volume-regulated anion channel subunit LRRC8A

    UniProtKB/TrEMBL
    A0A4X1TJT1, A0A8D0XBM4, A0A8D1SUF8, F1RR61
    Related
    ENSSSCP00000006068.2, ENSSSCT00000006227.5

  3. XM_005660498.3 → XP_005660555.1  volume-regulated anion channel subunit LRRC8A

    See identical proteins and their annotated locations for XP_005660555.1

    UniProtKB/TrEMBL
    A0A4X1TJT1, A0A8D0XBM4, A0A8D1SUF8, F1RR61

  4. XM_005660499.3 → XP_005660556.1  volume-regulated anion channel subunit LRRC8A

    See identical proteins and their annotated locations for XP_005660556.1

    UniProtKB/TrEMBL
    A0A4X1TJT1, A0A8D0XBM4, A0A8D1SUF8, F1RR61
Nucleotide Protein
Heading Accession and Version

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