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TCEA1 transcription elongation factor A1 [ Sus scrofa (pig) ]

Gene ID: 100157724, updated on 17-Aug-2024

Summary

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Official Symbol
TCEA1provided by VGNC
Official Full Name
transcription elongation factor A1provided by VGNC
Primary source
VGNC:VGNC:93811
See related
Ensembl:ENSSSCG00000006261
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in spleen (RPKM 46.4), kidney (RPKM 39.5) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See TCEA1 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
10
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 4 NC_010446.5 (77109555..77138324)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 4 NC_010446.4 (84179838..84208587)

Chromosome 4 - NC_010446.5Genomic Context describing neighboring genes Neighboring gene mitochondrial ribosomal protein L15 Neighboring gene lysophospholipase 1 Neighboring gene regulator of G protein signaling 20 Neighboring gene proline-rich receptor-like protein kinase PERK9

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
  2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transcription elongation by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription elongation factor A protein 1
Names
transcription elongation factor A (SII), 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001243680.1 → NP_001230609.1  transcription elongation factor A protein 1

    Status: VALIDATED

    Source sequence(s)
    AK234037, AK349980, CN162678, DY430435
    UniProtKB/TrEMBL
    A0A8D1W868
    Conserved Domains (4) summary
    cd00183
    Location:3 → 78
    TFIIS_I; N-terminal domain (domain I) of transcription elongation factor S-II (TFIIS); similar to a domain found in elongin A and CRSP70; likely to be involved in transcription; domain I from TFIIS interacts with RNA polymerase II holoenzyme
    cd13749
    Location:253 → 299
    Zn-ribbon_TFIIS; domain III/zinc ribbon domain of Transcription Factor IIS
    TIGR01385
    Location:4 → 300
    TFSII; transcription elongation factor S-II
    pfam07500
    Location:137 → 244
    TFIIS_M; Transcription factor S-II (TFIIS), central domain

RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010446.5 Reference Sscrofa11.1 Primary Assembly

    Range
    77109555..77138324
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005653062.3 → XP_005653119.1  transcription elongation factor A protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A4X1T3C5, A0A8D1W868
    Related
    ENSSSCP00000038125.2, ENSSSCT00000057659.3
    Conserved Domains (4) summary
    cd00183
    Location:3 → 78
    TFIIS_I; N-terminal domain (domain I) of transcription elongation factor S-II (TFIIS); similar to a domain found in elongin A and CRSP70; likely to be involved in transcription; domain I from TFIIS interacts with RNA polymerase II holoenzyme
    cd13749
    Location:254 → 300
    Zn-ribbon_TFIIS; domain III/zinc ribbon domain of Transcription Factor IIS
    TIGR01385
    Location:4 → 301
    TFSII; transcription elongation factor S-II
    pfam07500
    Location:138 → 245
    TFIIS_M; Transcription factor S-II (TFIIS), central domain
Nucleotide Protein
Heading Accession and Version

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