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LOC100177521 S-methyl-5'-thioadenosine phosphorylase-like [ Ciona intestinalis (vase tunicate) ]

Gene ID: 100177521, updated on 21-Dec-2023

Summary

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Gene symbol
LOC100177521
Gene description
S-methyl-5'-thioadenosine phosphorylase-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Ciona intestinalis
Lineage
Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona
Also known as
MTAP; MTAPase
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Genomic context

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See LOC100177521 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
3
Annotation release Status Assembly Chr Location
104 current KH (GCF_000224145.3) 6 NC_020171.2 (310298..311545)

Chromosome 6 - NC_020171.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100175252 Neighboring gene galectin-6 Neighboring gene galectin-6-like Neighboring gene microsomal triglyceride transfer protein large subunit-like Neighboring gene cyclin-dependent kinase D-3 Neighboring gene prohibitin-2-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_020171.2 Chromosome 6 Reference KH Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The draft genome of Ciona intestinalis: insights into chordate and vertebrate origins. Dehal P, et al. Science, 2002 Dec 13. PMID 12481130
  2. An integrated database of the ascidian, Ciona intestinalis: towards functional genomics. Satou Y, et al. Zoolog Sci, 2005 Aug. PMID 16141696
  3. A cDNA resource from the basal chordate Ciona intestinalis. Satou Y, et al. Genesis, 2002 Aug. PMID 12203911
  4. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  5. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables S-methyl-5-thioadenosine phosphorylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in L-methionine salvage from methylthioadenosine IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nucleoside metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
S-methyl-5'-thioadenosine phosphorylase
Names
5'-methylthioadenosine phosphorylase
MTA phosphorylase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ciona intestinalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference KH Primary Assembly

Genomic

  1. NC_020171.2 Reference KH Primary Assembly

    Range
    310298..311545
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026834807.1 → XP_026690608.1  S-methyl-5'-thioadenosine phosphorylase

    UniProtKB/Swiss-Prot
    F6X2V8
    Conserved Domains (1) summary
    cl00303
    Location:11 → 255
    PNP_UDP_1; Phosphorylase superfamily
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
F6X2V8.1 GenPept UniProtKB/Swiss-Prot:F6X2V8

Gene LinkOut

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