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LOC100183073 microsomal triglyceride transfer protein large subunit-like [ Ciona intestinalis (vase tunicate) ]

Gene ID: 100183073, updated on 21-Dec-2023

Summary

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Gene symbol
LOC100183073
Gene description
microsomal triglyceride transfer protein large subunit-like
See related
Ensembl:ENSCING00000002543
Gene type
protein coding
RefSeq status
MODEL
Organism
Ciona intestinalis
Lineage
Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona
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Genomic context

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See LOC100183073 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
20
Annotation release Status Assembly Chr Location
104 current KH (GCF_000224145.3) 6 NC_020171.2 (311296..321290, complement)

Chromosome 6 - NC_020171.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100175252 Neighboring gene galectin-6 Neighboring gene galectin-6-like Neighboring gene S-methyl-5'-thioadenosine phosphorylase-like Neighboring gene cyclin-dependent kinase D-3 Neighboring gene prohibitin-2-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_020171.2 Chromosome 6 Reference KH Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables lipid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables phospholipid transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in lipid transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in lipoprotein metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in basolateral plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
microsomal triglyceride transfer protein large subunit-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ciona intestinalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference KH Primary Assembly

Genomic

  1. NC_020171.2 Reference KH Primary Assembly

    Range
    311296..321290 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002131634.5 → XP_002131670.3  microsomal triglyceride transfer protein large subunit-like

    UniProtKB/TrEMBL
    F6XQV0
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials