U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Scarna10 small Cajal body-specific RNA 10 [ Mus musculus (house mouse) ]

Gene ID: 100217413, updated on 17-Aug-2024

Summary

Go to the top of the page Help
Official Symbol
Scarna10provided by MGI
Official Full Name
small Cajal body-specific RNA 10provided by MGI
Primary source
MGI:MGI:3819482
See related
AllianceGenome:MGI:3819482
Gene type
ncRNA
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
MBI-52
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See Scarna10 in Genome Data Viewer
Location:
6 F3; 6 59.32 cM
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (125163324..125163394, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (125186361..125186431, complement)

Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene intermediate filament family orphan 1 Neighboring gene STARR-seq mESC enhancer starr_17330 Neighboring gene STARR-positive B cell enhancer ABC_E2207 Neighboring gene glyceraldehyde-3-phosphate dehydrogenase Neighboring gene non-SMC condensin I complex, subunit D2 Neighboring gene STARR-seq mESC enhancer starr_17334 Neighboring gene STARR-seq mESC enhancer starr_17335 Neighboring gene mitochondrial ribosomal protein L51 Neighboring gene microRNA 3098

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Nopp 140 involvement in nucleologenesis of mouse preimplantation embryos. Baran V, et al. Mol Reprod Dev, 2001 Jul. PMID 11424213
  2. RNomics: an experimental approach that identifies 201 candidates for novel, small, non-messenger RNAs in mouse. Hüttenhofer A, et al. EMBO J, 2001 Jun 1. PMID 11387227, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_028517.2 RNA Sequence

    Status: PROVISIONAL

    Source sequence(s)
    AF357346

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000072.7 Reference GRCm39 C57BL/6J

    Range
    125163324..125163394 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.