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LOC100241717 6-phosphogluconate dehydrogenase, decarboxylating 1, chloroplastic [ Vitis vinifera (wine grape) ]

Gene ID: 100241717, updated on 23-Oct-2023

Summary

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Gene symbol
LOC100241717
Gene description
6-phosphogluconate dehydrogenase, decarboxylating 1, chloroplastic
Gene type
protein coding
RefSeq status
MODEL
Organism
Vitis vinifera
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
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Genomic context

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See LOC100241717 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2023_09 current ASM3070453v1 (GCF_030704535.1) 2 NC_081806.1 (692021..694047, complement)
102 previous assembly 12X (GCF_000003745.3) 2 NC_012008.3 (871128..873193, complement)

Chromosome 2 - NC_081806.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC132254995 Neighboring gene microRNA MIR319c Neighboring gene BTB/POZ domain-containing protein POB1 Neighboring gene uncharacterized LOC109121387 Neighboring gene uncharacterized LOC100244944 Neighboring gene uncharacterized LOC100260321

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables NADP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables phosphogluconate 2-dehydrogenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables phosphogluconate dehydrogenase (decarboxylating) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in D-gluconate catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in pentose-phosphate shunt IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in pentose-phosphate shunt, oxidative branch IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
6-phosphogluconate dehydrogenase, decarboxylating 1, chloroplastic
Names
6-phosphogluconate dehydrogenase, decarboxylating-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030704535.1-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3070453v1 Primary Assembly

Genomic

  1. NC_081806.1 Reference ASM3070453v1 Primary Assembly

    Range
    692021..694047 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002275934.5 → XP_002275970.1  6-phosphogluconate dehydrogenase, decarboxylating 1, chloroplastic

    UniProtKB/TrEMBL
    A0A438E6I8, A5BGC9, F6HUQ8
    Conserved Domains (3) summary
    PLN02350
    Location:1 → 494
    PLN02350; phosphogluconate dehydrogenase (decarboxylating)
    pfam00393
    Location:184 → 479
    6PGD; 6-phosphogluconate dehydrogenase, C-terminal domain
    pfam03446
    Location:7 → 180
    NAD_binding_2; NAD binding domain of 6-phosphogluconate dehydrogenase
Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases
Research Materials