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LOC100244389 transcription termination factor MTEF18, mitochondrial [ Vitis vinifera (wine grape) ]

Gene ID: 100244389, updated on 23-Oct-2023

Summary

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Gene symbol
LOC100244389
Gene description
transcription termination factor MTEF18, mitochondrial
Locus tag
VIT_00018245001
Gene type
protein coding
RefSeq status
MODEL
Organism
Vitis vinifera
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
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Genomic context

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See LOC100244389 in Genome Data Viewer
Location:
chromosome: 15
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_09 current ASM3070453v1 (GCF_030704535.1) 15 NC_081819.1 (15616790..15620399)
102 previous assembly 12X (GCF_000003745.3) 15 NC_012021.3 (12603499..12607012)

Chromosome 15 - NC_081819.1Genomic Context describing neighboring genes Neighboring gene homeobox-leucine zipper protein HAT4 Neighboring gene uncharacterized LOC100249550 Neighboring gene uncharacterized LOC100256424 Neighboring gene uncharacterized LOC104881805

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The high polyphenol content of grapevine cultivar tannat berries is conferred primarily by genes that are not shared with the reference genome. Da Silva C, et al. Plant Cell, 2013 Dec. PMID 24319081, Free PMC Article
  2. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Jaillon O, et al. Nature, 2007 Sep 27. PMID 17721507
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables double-stranded DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chloroplast organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription termination factor MTEF18, mitochondrial

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030704535.1-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3070453v1 Primary Assembly

Genomic

  1. NC_081819.1 Reference ASM3070453v1 Primary Assembly

    Range
    15616790..15620399
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002272858.4 → XP_002272894.1  transcription termination factor MTEF18, mitochondrial

    UniProtKB/TrEMBL
    A5AFK1
    Conserved Domains (1) summary
    cl19765
    Location:244 → 536
    mTERF; mTERF
Nucleotide Protein
Heading Accession and Version

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