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LOC100252114 uncharacterized LOC100252114 [ Vitis vinifera (wine grape) ]

Gene ID: 100252114, updated on 23-Oct-2023

Summary

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Gene symbol
LOC100252114
Gene description
uncharacterized LOC100252114
Locus tag
VIT_00024009001
Gene type
protein coding
RefSeq status
MODEL
Organism
Vitis vinifera
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
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Genomic context

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See LOC100252114 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2023_09 current ASM3070453v1 (GCF_030704535.1) 3 NC_081807.1 (1756274..1759864, complement)
102 previous assembly 12X (GCF_000003745.3) 3 NC_012009.3 (1764613..1768171, complement)

Chromosome 3 - NC_081807.1Genomic Context describing neighboring genes Neighboring gene glycerate dehydrogenase HPR, peroxisomal Neighboring gene aquaporin PIP2;2 Neighboring gene uncharacterized LOC104878318 Neighboring gene transcription factor ABORTED MICROSPORES

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Jaillon O, et al. Nature, 2007 Sep 27. PMID 17721507
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
part_of Prp19 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of catalytic step 2 spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of post-mRNA release spliceosomal complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein LOC100252114
Names
pre-mRNA-splicing factor syf2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030704535.1-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3070453v1 Primary Assembly

Genomic

  1. NC_081807.1 Reference ASM3070453v1 Primary Assembly

    Range
    1756274..1759864 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002279457.4 → XP_002279493.1  uncharacterized protein LOC100252114

    See identical proteins and their annotated locations for XP_002279493.1

    UniProtKB/TrEMBL
    A0A438DSY6
    Conserved Domains (1) summary
    pfam08231
    Location:159 → 306
    SYF2; SYF2 splicing factor
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Research Materials