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C5H12orf75 chromosome 5 C12orf75 homolog [ Bos taurus (domestic cattle) ]

Gene ID: 100270756, updated on 29-Jan-2025

Summary

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Official Symbol
C5H12orf75provided by VGNC
Official Full Name
chromosome 5 C12orf75 homologprovided by VGNC
Primary source
VGNC:VGNC:49166
See related
Ensembl:ENSBTAG00000058538
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Also known as
OCC1; OCC-1
Orthologs
human mouse all
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Genomic context

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See C5H12orf75 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 5 NC_037332.1 (68823269..68914970)

Chromosome 5 - NC_037332.1Genomic Context describing neighboring genes Neighboring gene WASH complex subunit 4 Neighboring gene adaptor protein, phosphotyrosine interacting with PH domain and leucine zipper 2 Neighboring gene uncharacterized LOC132345310 Neighboring gene uncharacterized LOC132345312

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037332.1 Chromosome 5 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Dominette sequence data
  • BioProject: PRJNA294306
  • Analysis date: Tue Dec 17 08:57:05 2024

Bibliography

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Related articles in PubMed

  1. Sequence evaluation of four pooled-tissue normalized bovine cDNA libraries and construction of a gene index for cattle. Smith TP, et al. Genome Res, 2001 Apr. PMID 11282978, Free PMC Article
  2. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
overexpressed in colon carcinoma 1 protein homolog
Names
overexpressed in colon carcinoma 1 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001145202.1 → NP_001138674.1  overexpressed in colon carcinoma 1 protein homolog

    See identical proteins and their annotated locations for NP_001138674.1

    Status: VALIDATED

    Source sequence(s)
    BI774763, DT858568, DV786344, DV831518, FE019526
    UniProtKB/Swiss-Prot
    P0C914
    UniProtKB/TrEMBL
    A0AAA9SX06
    Related
    ENSBTAP00070025567.1, ENSBTAT00070042780.1
    Conserved Domains (1) summary
    pfam15506
    Location:1 → 62
    OCC1; OCC1 family

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037332.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    68823269..68914970
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015471059.3 → XP_015326545.1  overexpressed in colon carcinoma 1 protein homolog isoform X5

    UniProtKB/TrEMBL
    A0AAA9SX06
    Conserved Domains (1) summary
    pfam15506
    Location:1 → 62
    OCC1; OCC1 family

  2. XM_015471060.3 → XP_015326546.1  overexpressed in colon carcinoma 1 protein homolog isoform X5

    UniProtKB/TrEMBL
    A0AAA9SX06
    Conserved Domains (1) summary
    pfam15506
    Location:1 → 62
    OCC1; OCC1 family

  3. XM_024991328.2 → XP_024847096.1  overexpressed in colon carcinoma 1 protein homolog isoform X3

    UniProtKB/TrEMBL
    A0AAA9SX06
    Conserved Domains (1) summary
    pfam15506
    Location:1 → 62
    OCC1; OCC1 family

  4. XM_005206486.5 → XP_005206543.1  overexpressed in colon carcinoma 1 protein homolog isoform X4

    UniProtKB/TrEMBL
    A0AAA9SX06
    Conserved Domains (1) summary
    pfam15506
    Location:1 → 62
    OCC1; OCC1 family

  5. XM_059886077.1 → XP_059742060.1  overexpressed in colon carcinoma 1 protein homolog isoform X1

    UniProtKB/TrEMBL
    A0A3Q1MEQ0

  6. XM_059886078.1 → XP_059742061.1  overexpressed in colon carcinoma 1 protein homolog isoform X2

RNA

  1. XR_806707.4 RNA Sequence

  2. XR_003034548.2 RNA Sequence

  3. XR_806706.4 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P0C914.1 GenPept UniProtKB/Swiss-Prot:P0C914

Gene LinkOut

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