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SAMM50P1 SAMM50 sorting and assembly machinery component pseudogene 1 [ Homo sapiens (human) ]

Gene ID: 100271893, updated on 10-Dec-2024

Summary

Official Symbol
SAMM50P1provided by HGNC
Official Full Name
SAMM50 sorting and assembly machinery component pseudogene 1provided by HGNC
Primary source
HGNC:HGNC:49778
See related
Ensembl:ENSG00000224488 AllianceGenome:HGNC:49778
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

See SAMM50P1 in Genome Data Viewer
Location:
9p22.2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (17447002..17448615, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (17459598..17461211, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 9 NC_000009.11 (17447000..17448613, complement)

Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene H3K27ac hESC enhancer GRCh37_chr9:17135319-17135882 Neighboring gene ribosomal protein S29 pseudogene 33 Neighboring gene ribosomal protein L31 pseudogene 42 Neighboring gene centlein Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:17290716-17291321 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:17294738-17295260 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:17295261-17295783 Neighboring gene VISTA enhancer hs529 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr9:17332022-17332668 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:17353653-17354168 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr9:17397207-17397728 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:17539955-17540454 Neighboring gene uncharacterized LOC107987051 Neighboring gene ReSE screen-validated silencer GRCh37_chr9:17577876-17578074 Neighboring gene poly(A) binding protein cytoplasmic 1 pseudogene 11 Neighboring gene SH3 domain containing GRB2 like 2, endophilin A1

Genomic regions, transcripts, and products

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_011613.1 

    Range
    101..1714
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

    Range
    17447002..17448615 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060933.1 Alternate T2T-CHM13v2.0

    Range
    17459598..17461211 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)