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sez6l seizure related 6 homolog like [ Danio rerio (zebrafish) ]

Gene ID: 100331987, updated on 3-Dec-2024

Summary

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Gene symbol
sez6l
Gene description
seizure related 6 homolog like
See related
Ensembl:ENSDARG00000100594
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Orthologs
human mouse all
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Genomic context

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See sez6l in Genome Data Viewer
Location:
chromosome: 10
Exon count:
17
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 10 NC_007121.7 (44581815..44670187)
105 previous assembly GRCz10 (GCF_000002035.5) 10 NC_007121.6 (44734949..44824078)

Chromosome 10 - NC_007121.7Genomic Context describing neighboring genes Neighboring gene huntingtin-interacting protein 1-related protein Neighboring gene nucleophosmin/nucleoplasmin, 2b Neighboring gene tyrosylprotein sulfotransferase 2 Neighboring gene ubiquitin C

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
seizure 6-like protein
Names
seizure related 6 homolog (mouse)-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007121.7 Reference GRCz11 Primary Assembly

    Range
    44581815..44670187
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005155435.5 → XP_005155492.1  seizure 6-like protein

    UniProtKB/TrEMBL
    A0A2R8Q401, A0A8M1RHI1, A0A8M2B1Y3
    Related
    ENSDARP00000147774.1, ENSDART00000190331.1
    Conserved Domains (5) summary
    cd00033
    Location:783 → 841
    CCP; Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system
    smart00032
    Location:655 → 710
    CCP; Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat (SCR)
    cd00041
    Location:538 → 646
    CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
    pfam00084
    Location:477 → 534
    Sushi; Sushi repeat (SCR repeat)
    cl00049
    Location:187 → 295
    CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
Nucleotide Protein Strain
Heading Accession and Version

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