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LOC100361636 vasculin-like protein 1-like [ Rattus norvegicus (Norway rat) ]

Gene ID: 100361636, updated on 4-Jan-2025

Summary

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Symbol
LOC100361636provided by RGD
Full Name
vasculin-like protein 1-likeprovided by RGD
Primary source
RGD:2319736
See related
EnsemblRapid:ENSRNOG00000033346 AllianceGenome:RGD:2319736
Gene type
protein coding
RefSeq status
MODEL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Predicted to enable DNA binding activity and RNA binding activity. Predicted to be involved in regulation of DNA-templated transcription. Predicted to be active in nucleus. [provided by Alliance of Genome Resources, Jan 2025]
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Genomic context

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See LOC100361636 in Genome Data Viewer
Location:
14q22
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 14 NC_086032.1 (100808668..100812047)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 14 NC_051349.1 (96607442..96610952)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 14 NC_005113.4 (107392042..107395562)

Chromosome 14 - NC_086032.1Genomic Context describing neighboring genes Neighboring gene transmembrane protein 17 Neighboring gene transfer RNA proline (anticodon AGG) 86 Neighboring gene ribosomal protein L28 like 3 Neighboring gene uncharacterized LOC120096692 Neighboring gene uncharacterized LOC102552091

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables RNA binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
  
involved_in positive regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
  
involved_in regulation of DNA-templated transcription IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
vasculin-like protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086032.1 Reference GRCr8

    Range
    100808668..100812047
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039092877.2 → XP_038948805.1  vasculin-like protein 1

    UniProtKB/TrEMBL
    A0A8I6GJT3
    Related
    ENSRNOP00000091623.1, ENSRNOT00000041470.5
    Conserved Domains (1) summary
    pfam15337
    Location:382 → 472
    Vasculin; Vascular protein family Vasculin-like 1
Nucleotide Protein Strain
Heading Accession and Version

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