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D430041D05Rikl RIKEN cDNA D430041D05 gene like [ Rattus norvegicus (Norway rat) ]

Gene ID: 100362814, updated on 4-Jan-2025

Summary

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Official Symbol
D430041D05Riklprovided by RGD
Official Full Name
RIKEN cDNA D430041D05 gene likeprovided by RGD
Primary source
RGD:2323964
See related
EnsemblRapid:ENSRNOG00000011132 AllianceGenome:RGD:2323964
Gene type
protein coding
RefSeq status
INFERRED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1310754
Summary
Predicted to be located in membrane. Orthologous to human KIAA1549L (KIAA1549 like). [provided by Alliance of Genome Resources, Jan 2025]
Expression
Biased expression in Brain (RPKM 63.1), Muscle (RPKM 13.2) and 2 other tissues See more
Orthologs
human mouse all
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Genomic context

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See D430041D05Rikl in Genome Data Viewer
Location:
3q32
Exon count:
21
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 3 NC_086021.1 (110961478..111237308, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 3 NC_051338.1 (90506559..90782427, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 3 NC_005102.4 (94058546..94334805, complement)

Chromosome 3 - NC_086021.1Genomic Context describing neighboring genes Neighboring gene similar to human chromosome 11 open reading frame 91 Neighboring gene CD59b molecule Neighboring gene homeodomain interacting protein kinase 3 Neighboring gene small nucleolar RNA SNORA17

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
UPF0606 protein KIAA1549L homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001419547.1 → NP_001406476.1  UPF0606 protein KIAA1549L homolog

    Status: INFERRED

    Source sequence(s)
    JAXUCZ010000003
    UniProtKB/TrEMBL
    A0A8I6GJS5
    Related
    ENSRNOP00000091597.2, ENSRNOT00000119491.2

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086021.1 Reference GRCr8

    Range
    110961478..111237308 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008762075.3 → XP_008760297.2  UPF0606 protein KIAA1549L homolog isoform X1

    UniProtKB/TrEMBL
    A0A8I6GJS5

  2. XM_017592182.3 → XP_017447671.1  UPF0606 protein KIAA1549L homolog isoform X3

    UniProtKB/TrEMBL
    F1LXC7
    Related
    ENSRNOP00000015073.8, ENSRNOT00000015073.9

  3. XM_039106457.2 → XP_038962385.1  UPF0606 protein KIAA1549L homolog isoform X4

    UniProtKB/TrEMBL
    A0A8I6AT67, F1LXC7
    Related
    ENSRNOP00000097723.1, ENSRNOT00000098606.2
    Conserved Domains (1) summary
    pfam12877
    Location:382 → 1020
    DUF3827; Domain of unknown function (DUF3827)

  4. XM_039106456.2 → XP_038962384.1  UPF0606 protein KIAA1549L homolog isoform X2

    UniProtKB/TrEMBL
    F1LXC7
    Conserved Domains (1) summary
    pfam12877
    Location:497 → 1135
    DUF3827; Domain of unknown function (DUF3827)
Nucleotide Protein Strain
Heading Accession and Version

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