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Rps27l3 ribosomal protein S27 like 3 [ Rattus norvegicus (Norway rat) ]

Gene ID: 100362987, updated on 9-Dec-2024

Summary

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Official Symbol
Rps27l3provided by RGD
Official Full Name
ribosomal protein S27 like 3provided by RGD
Primary source
RGD:2323707
See related
EnsemblRapid:ENSRNOG00000021159 AllianceGenome:RGD:2323707
Gene type
protein coding
RefSeq status
MODEL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Predicted to enable RNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to be involved in ribosomal small subunit assembly. Predicted to be located in nucleolus. Predicted to be part of cytosolic small ribosomal subunit. [provided by Alliance of Genome Resources, Dec 2024]
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Genomic context

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See Rps27l3 in Genome Data Viewer
Location:
9q11
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 9 NC_086027.1 (1242128..1245429)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 9 NC_051344.1 (1154781..1157065)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 9 NC_005108.4 (10737524..10737845, complement)

Chromosome 9 - NC_086027.1Genomic Context describing neighboring genes Neighboring gene perilipin 3 Neighboring gene arrestin domain containing 5 Neighboring gene ubiquitin-like with PHD and ring finger domains 1 Neighboring gene lysine demethylase 4B Neighboring gene transfer RNA lysine (anticodon CUU) 11 Neighboring gene protein tyrosine phosphatase, receptor type, S

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables RNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables structural constituent of ribosome IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in ribosomal small subunit assembly IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in translation IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of cytosolic small ribosomal subunit IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
small ribosomal subunit protein eS27-like
Names
40S ribosomal protein S27-like
ribosomal protein S27-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086027.1 Reference GRCr8

    Range
    1242128..1245429
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039084329.2 → XP_038940257.1  small ribosomal subunit protein eS27-like

    UniProtKB/TrEMBL
    A0A8L2QXZ3, M0RA26
    Related
    ENSRNOP00000066362.1, ENSRNOT00000028733.6
    Conserved Domains (1) summary
    PLN00209
    Location:6 → 82
    PLN00209; ribosomal protein S27; Provisional
Nucleotide Protein Strain
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Gene LinkOut

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