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C2h1orf162 similar to human chromosome 1 open reading frame 162 [ Rattus norvegicus (Norway rat) ]

Gene ID: 100363228, updated on 27-Nov-2024

Summary

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Official Symbol
C2h1orf162provided by RGD
Official Full Name
similar to human chromosome 1 open reading frame 162provided by RGD
Primary source
RGD:2323412
See related
EnsemblRapid:ENSRNOG00000070434 AllianceGenome:RGD:2323412
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Predicted to be located in membrane. [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Spleen (RPKM 74.4), Testes (RPKM 49.4) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See C2h1orf162 in Genome Data Viewer
Location:
2q34
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 2 NC_086020.1 (196101669..196107404, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 2 NC_051337.1 (193410730..193420824, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 2 NC_005101.4 (208554849..208562862, complement)

Chromosome 2 - NC_086020.1Genomic Context describing neighboring genes Neighboring gene transmembrane and immunoglobulin domain containing 3 Neighboring gene SUB1 regulator of transcription, pseudogene 4 Neighboring gene adenosine A3 receptor Neighboring gene ATP synthase peripheral stalk-membrane subunit b Neighboring gene WD repeat domain 77

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RGD

Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
similar to human chromosome 1 open reading frame 162; transmembrane protein C1orf162 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001433319.1 → NP_001420248.1  similar to human chromosome 1 open reading frame 162

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000002
    UniProtKB/TrEMBL
    A0A8I6A9C0

RNA

  1. NR_197352.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000002

  2. NR_197353.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000002

  3. NR_197354.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000002

  4. NR_197355.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000002

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086020.1 Reference GRCr8

    Range
    196101669..196107404 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017591328.3 → XP_017446817.1  transmembrane protein C1orf162 homolog

  2. XM_039103822.2 → XP_038959750.1  transmembrane protein C1orf162 homolog

    UniProtKB/TrEMBL
    A0A8I6A9C0
    Related
    ENSRNOP00000112038.1, ENSRNOT00000173886.1

  3. XM_039103821.2 → XP_038959749.1  transmembrane protein C1orf162 homolog

    UniProtKB/TrEMBL
    A0A8I6A9C0
    Related
    ENSRNOP00000111119.1, ENSRNOT00000130088.1

  4. XM_063282745.1 → XP_063138815.1  transmembrane protein C1orf162 homolog

    UniProtKB/TrEMBL
    A0A8I6A9C0
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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