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LIMS2 LIM zinc finger domain containing 2 [ Pongo abelii (Sumatran orangutan) ]

Gene ID: 100447027, updated on 10-Oct-2024

Summary

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Gene symbol
LIMS2
Gene description
LIM zinc finger domain containing 2
Locus tag
CR201_G0017929
See related
Ensembl:ENSPPYG00000012763
Gene type
protein coding
RefSeq status
MODEL
Organism
Pongo abelii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pongo
Orthologs
human mouse all
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Genomic context

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See LIMS2 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPonAbe1-v2.0_pri (GCF_028885655.2) 11 NC_071996.2 (20220816..20257629)
RS_2023_04 previous assembly NHGRI_mPonAbe1-v1.1-hic.freeze_pri (GCF_028885655.1) 2B NC_071987.1 (17625164..17662209)

Chromosome 11 - NC_071996.2Genomic Context describing neighboring genes Neighboring gene WD repeat domain 33 Neighboring gene SFT2 domain containing 3 Neighboring gene G protein-coupled receptor 17 Neighboring gene myosin VIIB Neighboring gene interacts with SUPT6H, CTD assembly factor 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell-cell junction organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of integrin-mediated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of substrate adhesion-dependent cell spreading IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell-cell junction IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in focal adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LIM and senescent cell antigen-like-containing domain protein 2
Names
LIM and senescent cell antigen-like domains 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028885655.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

Genomic

  1. NC_071996.2 Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

    Range
    20220816..20257629
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024243294.3 → XP_024099062.1  LIM and senescent cell antigen-like-containing domain protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A2J8VLT6, A0A2J8VLX1, A0A8I5TND1, H2P799
    Related
    ENSPPYP00000014240.2
    Conserved Domains (5) summary
    cd09331
    Location:15 → 73
    LIM1_PINCH; The first LIM domain of protein PINCH
    cd09332
    Location:76 → 127
    LIM2_PINCH; The second LIM domain of protein PINCH
    cd09333
    Location:140 → 190
    LIM3_PINCH; The third LIM domain of protein PINCH
    cd09334
    Location:196 → 249
    LIM4_PINCH; The fourth LIM domain of protein PINCH
    cd09335
    Location:257 → 310
    LIM5_PINCH; The fifth LIM domain of protein PINCH

  2. XM_063712704.1 → XP_063568774.1  LIM and senescent cell antigen-like-containing domain protein 2 isoform X2

    UniProtKB/TrEMBL
    A0A2J8VLU9, A0A8I5TE59
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials