U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC100496553 gastrula zinc finger protein XlCGF48.2 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 100496553, updated on 17-Aug-2024

Summary

Go to the top of the page Help
Official Symbol
LOC100496553provided by Xenbase
Official Full Name
gastrula zinc finger protein XlCGF48.2provided by Xenbase
Primary source
Xenbase:XB-GENE-29083215
See related
Ensembl:ENSXETG00000038808
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC100496553 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
13
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 2 NC_030678.2 (174602935..174617192, complement)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) Unplaced Scaffold NW_016683489.1 (65076..82009)

Chromosome 2 - NC_030678.2Genomic Context describing neighboring genes Neighboring gene proteasomal ATPase-associated factor 1-like Neighboring gene odorant receptor 131-2 Neighboring gene odorant receptor 131-2 Neighboring gene U2 spliceosomal RNA Neighboring gene sialidase 3 (membrane sialidase) gene 1

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

Go to the top of the page Help
Preferred Names
gastrula zinc finger protein XlCGF48.2; zinc finger protein 205

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030678.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    174602935..174617192 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012958086.2 → XP_012813540.1  gastrula zinc finger protein XlCGF48.2 isoform X3

    UniProtKB/TrEMBL
    A0A8J0SE90
    Related
    ENSXETP00000068204.2, ENSXETT00000089973.2
    Conserved Domains (4) summary
    COG5048
    Location:419 → 477
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:396 → 416
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:394 → 416
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:408 → 433
    zf-H2C2_2; Zinc-finger double domain

  2. XM_002942413.5 → XP_002942459.1  zinc finger protein 205 isoform X2

    UniProtKB/TrEMBL
    A0A803KCR1, A0A8J0QYZ3
    Related
    ENSXETP00000118181.1, ENSXETT00000118936.1
    Conserved Domains (4) summary
    COG5048
    Location:453 → 529
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:453 → 473
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:451 → 473
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:466 → 490
    zf-H2C2_2; Zinc-finger double domain

  3. XM_004912237.3 → XP_004912294.1  zinc finger protein 205 isoform X1

    UniProtKB/TrEMBL
    A0A803KCR1, A0A8J0R1L2
    Related
    ENSXETP00000112228.1, ENSXETT00000110228.1
    Conserved Domains (4) summary
    COG5048
    Location:476 → 552
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:476 → 496
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:474 → 496
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:489 → 513
    zf-H2C2_2; Zinc-finger double domain
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.