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Gm19461 predicted gene, 19461 [ Mus musculus (house mouse) ]

Gene ID: 100502933, updated on 22-Oct-2024

Summary

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Official Symbol
Gm19461provided by MGI
Official Full Name
predicted gene, 19461provided by MGI
Primary source
MGI:MGI:5011646
See related
Ensembl:ENSMUSG00000101693 AllianceGenome:MGI:5011646
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Broad expression in heart adult (RPKM 8.2), testis adult (RPKM 6.0) and 17 other tissues See more
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Genomic context

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See Gm19461 in Genome Data Viewer
Location:
1 E4; 1 57.91 cM
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 1 NC_000067.7 (133177590..133197546, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 1 NC_000067.6 (133249852..133269808, complement)

Chromosome 1 - NC_000067.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_02276 Neighboring gene protein phosphatase 1, regulatory subunit 15B Neighboring gene CapStarr-seq enhancer MGSCv37_chr1:135055920-135056124 Neighboring gene pleckstrin homology domain containing, family A member 6 Neighboring gene VISTA enhancer mm971 Neighboring gene VISTA enhancer mm1460 Neighboring gene STARR-seq mESC enhancer starr_02278 Neighboring gene STARR-seq mESC enhancer starr_02279 Neighboring gene predicted gene, 51648 Neighboring gene CapStarr-seq enhancer MGSCv37_chr1:135134303-135134461 Neighboring gene STARR-seq mESC enhancer starr_02280 Neighboring gene golgi transport 1A Neighboring gene predicted gene, 53474 Neighboring gene KiSS-1 metastasis-suppressor

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. The Vertebrate Genome Annotation browser 10 years on. Harrow JL, et al. Nucleic Acids Res, 2014 Jan. PMID 24316575, Free PMC Article
  2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
  5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_037984.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC158577
    Related
    ENSMUST00000191207.3

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000067.7 Reference GRCm39 C57BL/6J

    Range
    133177590..133197546 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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