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Speer4e2 spermatogenesis associated glutamate (E)-rich protein 4E2 [ Mus musculus (house mouse) ]

Gene ID: 100503549, updated on 27-Nov-2024

Summary

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Official Symbol
Speer4e2provided by MGI
Official Full Name
spermatogenesis associated glutamate (E)-rich protein 4E2provided by MGI
Primary source
MGI:MGI:3809109
See related
Ensembl:ENSMUSG00000072188 AllianceGenome:MGI:3809109
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm10354
Expression
Biased expression in testis adult (RPKM 10.5) and ovary adult (RPKM 0.6) See more
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Genomic context

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See Speer4e2 in Genome Data Viewer
Location:
5 A2; 5 6.48 cM
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (15024158..15028969, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (14974144..14978955, complement)

Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 52805 Neighboring gene spermatogenesis associated glutamate (E)-rich protein 8, pseudogene 1 Neighboring gene predicted gene 9758 Neighboring gene spermatogenesis associated glutamate (E)-rich protein 4E1 Neighboring gene predicted gene 17019 Neighboring gene predicted gene, 21149

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. SPEER--a new family of testis-specific genes from the mouse. Spiess AN, et al. Biol Reprod, 2003 Jun. PMID 12606357
  2. The transcriptional landscape of the mammalian genome. Carninci P, et al. Science, 2005 Sep 2. PMID 16141072

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
spermatogenesis associated glutamate (E)-rich protein-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001281514.1 → NP_001268443.1  spermatogenesis associated glutamate (E)-rich protein-like

    Status: VALIDATED

    Source sequence(s)
    AC144480, CJ042498
    Consensus CDS
    CCDS59668.1
    UniProtKB/TrEMBL
    K7N6A0, Q8C5Y0
    Related
    ENSMUSP00000094716.5, ENSMUST00000096953.5
    Conserved Domains (1) summary
    pfam04822
    Location:52 → 133
    Takusan; Takusan

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000071.7 Reference GRCm39 C57BL/6J

    Range
    15024158..15028969 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006503517.4 → XP_006503580.1  spermatogenesis associated glutamate (E)-rich protein-like isoform X1

    Conserved Domains (1) summary
    pfam04822
    Location:50 → 128
    Takusan
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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