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Gm19935 predicted gene, 19935 [ Mus musculus (house mouse) ]

Gene ID: 100503868, updated on 6-Oct-2024

Summary

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Official Symbol
Gm19935provided by MGI
Official Full Name
predicted gene, 19935provided by MGI
Primary source
MGI:MGI:5012120
See related
Ensembl:ENSMUSG00000110332 AllianceGenome:MGI:5012120
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm45396
Expression
Biased expression in testis adult (RPKM 11.0), lung adult (RPKM 3.6) and 6 other tissues See more
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Genomic context

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See Gm19935 in Genome Data Viewer
Location:
8 C4; 8 44.24 cM
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 8 NC_000074.7 (91542773..91544021, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 8 NC_000074.6 (90816145..90817393, complement)

Chromosome 8 - NC_000074.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 35850 Neighboring gene VISTA enhancer mm871 Neighboring gene predicted gene, 35963 Neighboring gene STARR-positive B cell enhancer mm9_chr8:93319223-93319524 Neighboring gene STARR-seq mESC enhancer starr_22282 Neighboring gene STARR-seq mESC enhancer starr_22284 Neighboring gene STARR-positive B cell enhancer mm9_chr8:93367415-93367716 Neighboring gene STARR-seq mESC enhancer starr_22288 Neighboring gene VISTA enhancer mm1483 Neighboring gene chromodomain helicase DNA binding protein 9 Neighboring gene STARR-seq mESC enhancer starr_22296 Neighboring gene predicted gene 6658 Neighboring gene STARR-positive B cell enhancer ABC_E3792 Neighboring gene predicted gene, 39221 Neighboring gene predicted gene, 22428

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. USP7 represses lineage differentiation genes in mouse embryonic stem cells by both catalytic and noncatalytic activities. Liu C, et al. Sci Adv, 2023 May 19. PMID 37196079, Free PMC Article
  2. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
  3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

See all (9) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_157160.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC129321, AK077163
    Related
    ENSMUST00000209208.2

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000074.7 Reference GRCm39 C57BL/6J

    Range
    91542773..91544021 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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