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Gm20149 predicted gene, 20149 [ Mus musculus (house mouse) ]

Gene ID: 100504283, updated on 17-Aug-2024

Summary

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Official Symbol
Gm20149provided by MGI
Official Full Name
predicted gene, 20149provided by MGI
Primary source
MGI:MGI:5012334
See related
AllianceGenome:MGI:5012334
Gene type
ncRNA
RefSeq status
MODEL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Low expression observed in reference dataset See more
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Genomic context

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See Gm20149 in Genome Data Viewer
Location:
10 A3; 10 9.75 cM
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 10 NC_000076.7 (20908931..20920020, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 10 NC_000076.6 (21034304..21044121, complement)

Chromosome 10 - NC_000076.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer mm9_chr10:20554956-20555257 Neighboring gene predicted gene, 33510 Neighboring gene predicted gene, 53617 Neighboring gene ribosomal protein S2, pseudogene 3 Neighboring gene STARR-seq mESC enhancer starr_25971 Neighboring gene STARR-positive B cell enhancer ABC_E2930 Neighboring gene Abelson helper integration site 1 Neighboring gene CapStarr-seq enhancer MGSCv37_chr10:20715221-20715330 Neighboring gene CapStarr-seq enhancer MGSCv37_chr10:20768493-20768817 Neighboring gene STARR-seq mESC enhancer starr_25973 Neighboring gene CapStarr-seq enhancer MGSCv37_chr10:20812313-20812607 Neighboring gene STARR-seq mESC enhancer starr_25978 Neighboring gene STARR-seq mESC enhancer starr_25982 Neighboring gene myeloblastosis oncogene Neighboring gene STARR-seq mESC enhancer starr_25983 Neighboring gene predicted gene, 40608

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  2. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  3. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
  4. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article
  5. Functional annotation of a full-length mouse cDNA collection. Kawai J, et al. Nature, 2001 Feb 8. PMID 11217851

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000076.7 Reference GRCm39 C57BL/6J

    Range
    20908931..20920020 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_003948833.2 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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