U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LINC03125 long intergenic non-protein coding RNA 3125 [ Homo sapiens (human) ]

Gene ID: 100505664, updated on 28-Oct-2024

Summary

Go to the top of the page Help
Official Symbol
LINC03125provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 3125provided by HGNC
Primary source
HGNC:HGNC:57012
See related
Ensembl:ENSG00000230387 AllianceGenome:HGNC:57012
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in testis (RPKM 1.5), skin (RPKM 1.3) and 5 other tissues See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LINC03125 in Genome Data Viewer
Location:
20p11.21
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 20 NC_000020.11 (23159640..23190307)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 20 NC_060944.1 (23219032..23249699)

Chromosome 20 - NC_000020.11Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17627 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17628 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17629 Neighboring gene CD93 molecule Neighboring gene ReSE screen-validated silencer GRCh37_chr20:23097446-23097628 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17630 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr20:23117070-23118269 Neighboring gene long intergenic non-protein coding RNA 656 Neighboring gene Sharpr-MPRA regulatory region 14145 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr20:23128189-23129388 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:23130883-23131866 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12722 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17631 Neighboring gene RNA, 5S ribosomal pseudogene 478 Neighboring gene Sharpr-MPRA regulatory region 4869 Neighboring gene MPRA-validated peak4168 silencer Neighboring gene Sharpr-MPRA regulatory region 11415 Neighboring gene Sharpr-MPRA regulatory region 15236 Neighboring gene uncharacterized LOC105372571 Neighboring gene NXT1 antisense RNA 1 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12723 Neighboring gene ReSE screen-validated silencer GRCh37_chr20:23325274-23325494 Neighboring gene H3K27ac hESC enhancers GRCh37_chr20:23330429-23331301 and GRCh37_chr20:23331302-23332173 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17633 Neighboring gene nuclear transport factor 2 like export factor 1

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. N7-Methylguanosine-Related lncRNAs: Integrated Analysis Associated With Prognosis and Progression in Clear Cell Renal Cell Carcinoma. Ming J, et al. Front Genet, 2022. PMID 35495133, Free PMC Article
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039

GeneRIFs: Gene References Into Functions

Phenotypes

Go to the top of the page Help

Review eQTL and phenotype association data in this region using PheGenI

Variation

Go to the top of the page Help

See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh38)

General gene information

Go to the top of the page Help

Markers

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000020.11 Reference GRCh38.p14 Primary Assembly

    Range
    23159640..23190307
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_937371.2 RNA Sequence

  2. XR_002958561.1 RNA Sequence

    Related
    ENST00000670920.1

  3. XR_937375.3 RNA Sequence

    Related
    ENST00000667919.1

  4. XR_002958565.2 RNA Sequence

    Related
    ENST00000656146.1

  5. XR_430281.3 RNA Sequence

  6. XR_001754548.1 RNA Sequence

  7. XR_937365.2 RNA Sequence

    Related
    ENST00000671163.1

  8. XR_002958563.1 RNA Sequence

    Related
    ENST00000720395.1

  9. XR_002958560.1 RNA Sequence

    Related
    ENST00000659548.1

  10. XR_002958566.1 RNA Sequence

    Related
    ENST00000658111.1

  11. XR_002958562.1 RNA Sequence

    Related
    ENST00000671352.1

  12. XR_002958564.1 RNA Sequence

    Related
    ENST00000656699.1

  13. XR_937368.2 RNA Sequence

    Related
    ENST00000666551.1

  14. XR_002958567.1 RNA Sequence

    Related
    ENST00000622708.2

  15. XR_937376.2 RNA Sequence

    Related
    ENST00000668880.2

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060944.1 Alternate T2T-CHM13v2.0

    Range
    23219032..23249699
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007089871.1 RNA Sequence

  2. XR_007089876.1 RNA Sequence

  3. XR_007089877.1 RNA Sequence

  4. XR_007089878.1 RNA Sequence

  5. XR_007089868.1 RNA Sequence

  6. XR_007089875.1 RNA Sequence

  7. XR_007089866.1 RNA Sequence

  8. XR_007089870.1 RNA Sequence

  9. XR_007089865.1 RNA Sequence

  10. XR_007089874.1 RNA Sequence

  11. XR_007089867.1 RNA Sequence

  12. XR_007089873.1 RNA Sequence

  13. XR_007089864.1 RNA Sequence

  14. XR_007089869.1 RNA Sequence

  15. XR_007089872.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Chemical Information
Molecular Biology Databases
Research Materials