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LINC03074 long intergenic non-protein coding RNA 3074 [ Homo sapiens (human) ]

Gene ID: 100505685, updated on 28-Oct-2024

Summary

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Official Symbol
LINC03074provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 3074provided by HGNC
Primary source
HGNC:HGNC:56654
See related
Ensembl:ENSG00000251249 AllianceGenome:HGNC:56654
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward testis (RPKM 11.2) See more
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Genomic context

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See LINC03074 in Genome Data Viewer
Location:
4q31.3
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (151955977..151969376)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (155279079..155292467)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (152877129..152890528)

Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC127898557 Neighboring gene uncharacterized LOC102724700 Neighboring gene uncharacterized LOC127898556 Neighboring gene RNA, 5S ribosomal pseudogene 169 Neighboring gene NANOG hESC enhancer GRCh37_chr4:152925827-152926328 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22025 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:152945037-152945536 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15749 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22026 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22027 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22028 Neighboring gene H3K27ac hESC enhancer GRCh37_chr4:153021562-153022062 Neighboring gene H3K27ac hESC enhancer GRCh37_chr4:153022063-153022563 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr4:153022858-153024057 Neighboring gene long intergenic non-protein coding RNA 2273

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. A testis-specific lncRNA functions as a post-transcriptional regulator of MDM2 and stimulates apoptosis of testicular germ cell tumor cells. Ito S, et al. Cell Death Discov, 2024 Aug 3. PMID 39097584, Free PMC Article
  2. A panel of extracellular vesicle long noncoding RNAs in seminal plasma for predicting testicular spermatozoa in nonobstructive azoospermia patients. Xie Y, et al. Hum Reprod, 2020 Nov 1. PMID 32914196
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Markers

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_183803.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC097375
    Related
    ENST00000515329.2

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

    Range
    151955977..151969376
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060928.1 Alternate T2T-CHM13v2.0

    Range
    155279079..155292467
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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