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LOC100505985 uncharacterized LOC100505985 [ Homo sapiens (human) ]

Gene ID: 100505985, updated on 17-Sep-2024

Summary

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Gene symbol
LOC100505985
Gene description
uncharacterized LOC100505985
See related
Ensembl:ENSG00000226733
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward kidney (RPKM 17.2) See more
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Genomic context

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See LOC100505985 in Genome Data Viewer
Location:
6p12.3
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (50093608..50099283)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (49936526..49942204)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (50061321..50066996)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene defensin beta 110 Neighboring gene defensin beta 112 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr6:50224922-50225528 Neighboring gene uncharacterized LOC124901479 Neighboring gene ReSE screen-validated silencer GRCh37_chr6:50533627-50533787 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:50674460-50674961 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:50675081-50675582 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:50675583-50676082 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr6:50682973-50683503 Neighboring gene VISTA enhancer hs865 Neighboring gene Sharpr-MPRA regulatory region 1859 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr6:50691426-50692118 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:50692119-50692809 Neighboring gene transcription factor AP-2 delta

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_187616.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL138879
    Related
    ENST00000415106.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

    Range
    50093608..50099283
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060930.1 Alternate T2T-CHM13v2.0

    Range
    49936526..49942204
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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