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EDDM13 epididymal protein 13 [ Homo sapiens (human) ]

Gene ID: 100506374, updated on 27-Nov-2024

Summary

Official Symbol
EDDM13provided by HGNC
Official Full Name
epididymal protein 13provided by HGNC
Primary source
HGNC:HGNC:53168
See related
Ensembl:ENSG00000267710 AllianceGenome:HGNC:53168
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
Predicted to be located in extracellular region and membrane. [provided by Alliance of Genome Resources, Nov 2024]
Expression
Low expression observed in reference dataset See more
Orthologs
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Genomic context

See EDDM13 in Genome Data Viewer
Location:
19q13.43
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 19 NC_000019.10 (56272748..56310454)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 19 NC_060943.1 (59371075..59408175)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 19 NC_000019.9 (56784117..56821823)

Chromosome 19 - NC_000019.10Genomic Context describing neighboring genes Neighboring gene zinc finger and SCAN domain containing 5A Neighboring gene zinc finger and SCAN domain containing 5D pseudogene Neighboring gene uncharacterized LOC124904775 Neighboring gene uncharacterized LOC124900420 Neighboring gene uncharacterized LOC105372468 Neighboring gene ZSCAN5A antisense RNA 1 Neighboring gene glycerol-3-phosphate dehydrogenase 2 (mitochondrial) pseudogene Neighboring gene vomeronasal 2 receptor 17, pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001354658.2NP_001341587.1  epididymal protein 13 precursor

    Status: VALIDATED

    Source sequence(s)
    AC006116, AC011506
    Consensus CDS
    CCDS92694.1
    UniProtKB/Swiss-Prot
    A0A1B0GTR0
    Related
    ENSP00000497858.1, ENST00000649256.2

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000019.10 Reference GRCh38.p14 Primary Assembly

    Range
    56272748..56310454
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060943.1 Alternate T2T-CHM13v2.0

    Range
    59371075..59408175
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054319479.1XP_054175454.1  epididymal protein 13 isoform X1