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LINC01815 long intergenic non-protein coding RNA 1815 [ Homo sapiens (human) ]

Gene ID: 100507201, updated on 22-Oct-2024

Summary

Official Symbol
LINC01815provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1815provided by HGNC
Primary source
HGNC:HGNC:52619
See related
Ensembl:ENSG00000235519 AllianceGenome:HGNC:52619
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward testis (RPKM 3.3) See more
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Genomic context

See LINC01815 in Genome Data Viewer
Location:
2p12
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (81461359..81466946, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (81461912..81467499, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (81688483..81694070, complement)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:81420933-81421434 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:81421435-81421934 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:81433285-81433784 Neighboring gene ANKRD11 pseudogene 1 Neighboring gene NANOG hESC enhancer GRCh37_chr2:81622884-81623398 Neighboring gene CHMP4A pseudogene 1 Neighboring gene uncharacterized LOC102724542 Neighboring gene RNA, 5S ribosomal pseudogene 99 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr2:81884908-81886107 Neighboring gene uncharacterized LOC105374828

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_110161.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AA429605, AA432216, AC012075
    Related
    ENST00000729821.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    81461359..81466946 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    81461912..81467499 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)