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SPOUT1 SPOUT domain containing methyltransferase 1 [ Sus scrofa (pig) ]

Gene ID: 100514697, updated on 17-Aug-2024

Summary

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Official Symbol
SPOUT1provided by VGNC
Official Full Name
SPOUT domain containing methyltransferase 1provided by VGNC
Primary source
VGNC:VGNC:93418
See related
Ensembl:ENSSSCG00000005662
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in ovary (RPKM 8.6), kidney (RPKM 6.4) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See SPOUT1 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
12
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 1 NC_010443.5 (269157173..269167154, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 1 NC_010443.4 (303173218..303183186, complement)

Chromosome 1 - NC_010443.5Genomic Context describing neighboring genes Neighboring gene zyg-11 related cell cycle regulator Neighboring gene TBC1 domain family member 13 Neighboring gene endonuclease G Neighboring gene kynurenine aminotransferase 1 Neighboring gene leucine rich repeat containing 8 VRAC subunit A

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables miRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in maintenance of centrosome location IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in miRNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in kinetochore IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in mitotic spindle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in spindle pole centrosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
putative methyltransferase C9orf114 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010443.5 Reference Sscrofa11.1 Primary Assembly

    Range
    269157173..269167154 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003122207.4 → XP_003122255.1  putative methyltransferase C9orf114 homolog isoform X2

    UniProtKB/TrEMBL
    A0A287AZQ3, A0A480UFD7, A0A4X1TPQ1, A0A8D1MC00, A0A8D1YPQ7
    Related
    ENSSSCP00000049445.2, ENSSSCT00000047700.3
    Conserved Domains (1) summary
    pfam02598
    Location:76 → 365
    Methyltrn_RNA_3; Putative RNA methyltransferase

  2. XM_005660497.3 → XP_005660554.1  putative methyltransferase C9orf114 homolog isoform X1

    UniProtKB/TrEMBL
    A0A480PLE9, A0A4X1TM33, A0A8D1FTD7, F1RR63
    Related
    ENSSSCP00000006066.4, ENSSSCT00000006225.4
    Conserved Domains (1) summary
    pfam02598
    Location:76 → 364
    Methyltrn_RNA_3; Putative RNA methyltransferase
Nucleotide Protein
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