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ENDOG endonuclease G [ Sus scrofa (pig) ]

Gene ID: 100514888, updated on 17-Aug-2024

Summary

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Official Symbol
ENDOGprovided by VGNC
Official Full Name
endonuclease Gprovided by VGNC
Primary source
VGNC:VGNC:87698
See related
Ensembl:ENSSSCG00000005661
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in heart (RPKM 17.7), kidney (RPKM 13.9) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See ENDOG in Genome Data Viewer
Location:
chromosome: 1
Exon count:
3
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 1 NC_010443.5 (269153955..269157789)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 1 NC_010443.4 (303170007..303173838)

Chromosome 1 - NC_010443.5Genomic Context describing neighboring genes Neighboring gene zyg-11 related cell cycle regulator Neighboring gene TBC1 domain family member 13 Neighboring gene SPOUT domain containing methyltransferase 1 Neighboring gene kynurenine aminotransferase 1 Neighboring gene leucine rich repeat containing 8 VRAC subunit A

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA endonuclease activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables single-stranded DNA endodeoxyribonuclease activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in apoptotic DNA fragmentation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrial inner membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
endonuclease G, mitochondrial

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010443.5 Reference Sscrofa11.1 Primary Assembly

    Range
    269153955..269157789
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003122208.4 → XP_003122256.1  endonuclease G, mitochondrial

    UniProtKB/TrEMBL
    A0A4X1TPJ9, A0A8D0XC11, A0A8D1SWN4, F1RR64
    Related
    ENSSSCP00000006065.2, ENSSSCT00000006224.3
    Conserved Domains (1) summary
    smart00477
    Location:80 → 286
    NUC; DNA/RNA non-specific endonuclease
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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