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LOC100616520 HLA class II histocompatibility antigen, DQ beta 1 chain [ Pan troglodytes (chimpanzee) ]

Gene ID: 100616520, updated on 10-Oct-2024

Summary

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Gene symbol
LOC100616520
Gene description
HLA class II histocompatibility antigen, DQ beta 1 chain
See related
Ensembl:ENSPTRG00000018018
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Also known as
MHC-DQB1; Patr-DQB1
Orthologs
human all
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Genomic context

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See LOC100616520 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 5 NC_072403.2 (38550704..38559324, complement)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 6 NC_072404.1 (38550717..38557520, complement)

Chromosome 5 - NC_072403.2Genomic Context describing neighboring genes Neighboring gene HLA class II histocompatibility antigen, DR beta 4 chain-like Neighboring gene major histocompatibility complex, class II, DQ beta 1 Neighboring gene major histocompatibility complex, class II, DQ alpha 1 Neighboring gene uncharacterized LOC107975113 Neighboring gene major histocompatibility complex, class II, DQ alpha 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Molecular mechanism and cellular function of MHCII ubiquitination. Oh J, et al. Immunol Rev, 2015 Jul. PMID 26085212, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in antigen processing and presentation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of MHC class II protein complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
HLA class II histocompatibility antigen, DQ beta 1 chain
Names
MHC DQ-beta 1
MHC class II antigen
MHC class II antigen DQ beta 1 chain
MHC class II beta chain
MHC-class II protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072403.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    38550704..38559324 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003339118.5 → XP_003339166.1  HLA class II histocompatibility antigen, DQ beta 1 chain isoform X5

    UniProtKB/TrEMBL
    A0A1C4TVF4, H2QSR6
    Related
    ENSPTRP00000030768.5
    Conserved Domains (2) summary
    cd05766
    Location:129 → 222
    IgC_MHC_II_beta; Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain
    pfam00969
    Location:45 → 117
    MHC_II_beta; Class II histocompatibility antigen, beta domain

  2. XM_063812367.1 → XP_063668437.1  HLA class II histocompatibility antigen, DQ beta 1 chain isoform X3

  3. XM_063812366.1 → XP_063668436.1  HLA class II histocompatibility antigen, DQ beta 1 chain isoform X1

  4. XM_016955230.3 → XP_016810719.1  HLA class II histocompatibility antigen, DQ beta 1 chain isoform X4

    UniProtKB/TrEMBL
    A0A1C4TVF4
    Conserved Domains (2) summary
    cd05766
    Location:167 → 260
    IgC_MHC_II_beta; Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain
    pfam00969
    Location:83 → 155
    MHC_II_beta; Class II histocompatibility antigen, beta domain

  5. XM_009450988.3 → XP_009449263.2  HLA class II histocompatibility antigen, DQ beta 1 chain isoform X2

Nucleotide Protein
Heading Accession and Version

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