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LOC100775919 magnesium-chelatase subunit ChlD, chloroplastic [ Glycine max (soybean) ]

Gene ID: 100775919, updated on 7-Dec-2023

Summary

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Gene symbol
LOC100775919
Gene description
magnesium-chelatase subunit ChlD, chloroplastic
Locus tag
GLYMA_01G226700v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
Also known as
ChlD2
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Genomic context

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See LOC100775919 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
16
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 1 NC_016088.4 (56605577..56615286)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 1 NC_016088.3 (55505528..55515223)

Chromosome 1 - NC_016088.4Genomic Context describing neighboring genes Neighboring gene cytochrome P450 97B2, chloroplastic-like Neighboring gene scarecrow-like protein 3 Neighboring gene THUMP domain-containing protein 1 homolog Neighboring gene hexokinase-3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Molecular Characterization of Magnesium Chelatase in Soybean [Glycine max (L.) Merr.]. Zhang D, et al. Front Plant Sci, 2018. PMID 29971071, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables magnesium chelatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chlorophyll biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
magnesium-chelatase subunit ChlD, chloroplastic
Names
chloroplast magnesium chelatase D subunit

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_016088.4 Reference Glycine_max_v4.0 Primary Assembly

    Range
    56605577..56615286
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003517468.5 → XP_003517516.1  magnesium-chelatase subunit ChlD, chloroplastic isoform X1

    See identical proteins and their annotated locations for XP_003517516.1

    UniProtKB/TrEMBL
    K7K5C0
    Conserved Domains (1) summary
    TIGR02031
    Location:86 → 737
    BchD-ChlD; magnesium chelatase ATPase subunit D

  2. XM_006573753.4 → XP_006573816.1  magnesium-chelatase subunit ChlD, chloroplastic isoform X3

    Conserved Domains (3) summary
    TIGR02030
    Location:77 → 391
    BchI-ChlI; magnesium chelatase ATPase subunit I
    cl00057
    Location:546 → 585
    vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...
    cl21455
    Location:79 → 261
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

  3. XM_041017379.1 → XP_040873313.1  magnesium-chelatase subunit ChlD, chloroplastic isoform X4

    Conserved Domains (1) summary
    TIGR02031
    Location:1 → 454
    BchD-ChlD; magnesium chelatase ATPase subunit D

  4. XM_006573752.4 → XP_006573815.1  magnesium-chelatase subunit ChlD, chloroplastic isoform X2

    UniProtKB/TrEMBL
    A0A0R0LNH6
    Conserved Domains (1) summary
    TIGR02031
    Location:35 → 602
    BchD-ChlD; magnesium chelatase ATPase subunit D
Nucleotide Protein
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