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LOC100783270 PH, RCC1 and FYVE domains-containing protein 1 [ Glycine max (soybean) ]

Gene ID: 100783270, updated on 7-Dec-2023

Summary

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Gene symbol
LOC100783270
Gene description
PH, RCC1 and FYVE domains-containing protein 1
Locus tag
GLYMA_10G226900v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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Genomic context

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See LOC100783270 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
9
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 10 NC_038246.2 (45809394..45817643, complement)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 10 NC_038246.1 (45733998..45742410, complement)

Chromosome 10 - NC_038246.2Genomic Context describing neighboring genes Neighboring gene RNA-binding protein 2 Neighboring gene RNA-binding protein 2 Neighboring gene L-type lectin-domain containing receptor kinase S.6 Neighboring gene uncharacterized LOC102666082

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
PH, RCC1 and FYVE domains-containing protein 1
Names
E3 ubiquitin-protein ligase HERC2-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_038246.2 Reference Glycine_max_v4.0 Primary Assembly

    Range
    45809394..45817643 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003535527.5 → XP_003535575.1  PH, RCC1 and FYVE domains-containing protein 1

    See identical proteins and their annotated locations for XP_003535575.1

    UniProtKB/TrEMBL
    A0A0R0HXR5, I1LDI2
    Conserved Domains (6) summary
    smart00064
    Location:623 → 689
    FYVE; Protein present in Fab1, YOTB, Vac1, and EEA1
    COG5184
    Location:281 → 624
    ATS1; Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton]
    cd13365
    Location:12 → 124
    PH_PLC_plant-like; Plant-like Phospholipase C (PLC) pleckstrin homology (PH) domain
    pfam08287
    Location:818 → 902
    DASH_Spc19; Spc19
    pfam08381
    Location:1041 → 1096
    BRX; Transcription factor regulating root and shoot growth via Pin3
    pfam13713
    Location:876 → 911
    BRX_N; Transcription factor BRX N-terminal domain
Nucleotide Protein
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