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LOC100794954 exo-poly-alpha-D-galacturonosidase [ Glycine max (soybean) ]

Gene ID: 100794954, updated on 7-Dec-2023

Summary

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Gene symbol
LOC100794954
Gene description
exo-poly-alpha-D-galacturonosidase
Locus tag
GLYMA_19G143700v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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Genomic context

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See LOC100794954 in Genome Data Viewer
Location:
chromosome: 19
Exon count:
3
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 19 NC_038255.2 (40936812..40939794, complement)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 19 NC_038255.1 (40491821..40494876, complement)

Chromosome 19 - NC_038255.2Genomic Context describing neighboring genes Neighboring gene probably inactive leucine-rich repeat receptor-like protein kinase At5g06940 Neighboring gene uncharacterized LOC100804499 Neighboring gene tRNA-splicing endonuclease subunit Sen2-1-like Neighboring gene transcription factor bHLH48-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables polygalacturonase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
exo-poly-alpha-D-galacturonosidase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_038255.2 Reference Glycine_max_v4.0 Primary Assembly

    Range
    40936812..40939794 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003554139.5 → XP_003554187.1  exo-poly-alpha-D-galacturonosidase

    UniProtKB/TrEMBL
    I1N942
    Conserved Domains (1) summary
    COG5434
    Location:32 → 307
    Pgu1; Polygalacturonase [Carbohydrate transport and metabolism]
Nucleotide Protein
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