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LOC100799223 nicotinate phosphoribosyltransferase 2 [ Glycine max (soybean) ]

Gene ID: 100799223, updated on 7-Dec-2023

Summary

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Gene symbol
LOC100799223
Gene description
nicotinate phosphoribosyltransferase 2
Locus tag
GLYMA_05G094000v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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Genomic context

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See LOC100799223 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
15
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 5 NC_038241.2 (23892503..23902692)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 5 NC_038241.1 (23861873..23872098)

Chromosome 5 - NC_038241.2Genomic Context describing neighboring genes Neighboring gene sucrose synthase 2-like Neighboring gene uncharacterized LOC106798826 Neighboring gene small nucleolar RNA R71 Neighboring gene small nucleolar RNA R71 Neighboring gene PI-PLC X domain-containing protein At5g67130-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables nicotinate phosphoribosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in NAD biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nicotinate phosphoribosyltransferase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_038241.2 Reference Glycine_max_v4.0 Primary Assembly

    Range
    23892503..23902692
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003524600.4 → XP_003524648.1  nicotinate phosphoribosyltransferase 2

    UniProtKB/TrEMBL
    A0A0R0K3G6, I1K246
    Conserved Domains (1) summary
    PLN02885
    Location:16 → 557
    PLN02885; nicotinate phosphoribosyltransferase
Nucleotide Protein
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