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LOC100801120 two-component response regulator ARR18 [ Glycine max (soybean) ]

Gene ID: 100801120, updated on 7-Dec-2023

Summary

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Gene symbol
LOC100801120
Gene description
two-component response regulator ARR18
Locus tag
GLYMA_03G051400v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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Genomic context

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See LOC100801120 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
5
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 3 NC_016090.4 (6765277..6768441)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 3 NC_016090.3 (6740891..6743133)

Chromosome 3 - NC_016090.4Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102663984 Neighboring gene ethylene-overproduction protein 1 Neighboring gene uncharacterized LOC102665989 Neighboring gene ammonium transporter 2-like Neighboring gene auxin-binding protein ABP19b-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables transcription cis-regulatory region binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in abaxial cell fate specification IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
two-component response regulator ARR18

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_016090.4 Reference Glycine_max_v4.0 Primary Assembly

    Range
    6765277..6768441
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    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003520304.5 → XP_003520352.1  two-component response regulator ARR18

    UniProtKB/TrEMBL
    K7KCY9
    Conserved Domains (1) summary
    TIGR01557
    Location:62 → 117
    myb_SHAQKYF; myb-like DNA-binding domain, SHAQKYF class
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Other Literature Sources
Molecular Biology Databases