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LOC100808070 oxysterol-binding protein-related protein 3C-like [ Glycine max (soybean) ]

Gene ID: 100808070, updated on 11-Apr-2024

Summary

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Gene symbol
LOC100808070
Gene description
oxysterol-binding protein-related protein 3C-like
Locus tag
GLYMA_11G138800v4
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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Genomic context

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See LOC100808070 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
10
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 11 NC_038247.2 (10534440..10539511, complement)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 11 NC_038247.1 (10560718..10565789, complement)

Chromosome 11 - NC_038247.2Genomic Context describing neighboring genes Neighboring gene scarecrow-like protein 14 Neighboring gene telomere repeat-binding protein 5 Neighboring gene respirasome Complex Assembly Factor 1 Neighboring gene uncharacterized LOC100797976

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sterol binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in intracellular membrane-bounded organelle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
Oxysterol-binding protein-related protein 3C-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001254015.2 → NP_001240944.1  Oxysterol-binding protein-related protein 3C-like

    See identical proteins and their annotated locations for NP_001240944.1

    Status: VALIDATED

    Source sequence(s)
    AW395777, BM308012, BT097049
    UniProtKB/TrEMBL
    C6THD1
    Conserved Domains (1) summary
    pfam01237
    Location:64 → 418
    Oxysterol_BP; Oxysterol-binding protein

RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_038247.2 Reference Glycine_max_v4.0 Primary Assembly

    Range
    10534440..10539511 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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