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LOC100812718 uncharacterized LOC100812718 [ Glycine max (soybean) ]

Gene ID: 100812718, updated on 7-Dec-2023

Summary

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Gene symbol
LOC100812718
Gene description
uncharacterized LOC100812718
Locus tag
GLYMA_11G101600v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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Genomic context

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See LOC100812718 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
25
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 11 NC_038247.2 (7673036..7691528)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 11 NC_038247.1 (7680022..7698594)

Chromosome 11 - NC_038247.2Genomic Context describing neighboring genes Neighboring gene endoglucanase 5 Neighboring gene enoyl-[acyl-carrier-protein] reductase [NADH], chloroplastic Neighboring gene nucleolin 1 Neighboring gene MAP3K epsilon protein kinase 1 Neighboring gene GTP-binding protein BRASSINAZOLE INSENSITIVE PALE GREEN 2, chloroplastic

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrial outer membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein LOC100812718

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_038247.2 Reference Glycine_max_v4.0 Primary Assembly

    Range
    7673036..7691528
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006590743.4 → XP_006590806.1  uncharacterized protein LOC100812718 isoform X1

    See identical proteins and their annotated locations for XP_006590806.1

    UniProtKB/TrEMBL
    K7LNX7
    Conserved Domains (3) summary
    pfam17862
    Location:938 → 974
    AAA_lid_3; AAA+ lid domain
    NF033609
    Location:266 → 330
    MSCRAMM_ClfA; MSCRAMM family adhesin clumping factor ClfA
    cl38936
    Location:748 → 914
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

  2. XM_006590742.4 → XP_006590805.1  uncharacterized protein LOC100812718 isoform X1

    See identical proteins and their annotated locations for XP_006590805.1

    UniProtKB/TrEMBL
    K7LNX7
    Conserved Domains (3) summary
    pfam17862
    Location:938 → 974
    AAA_lid_3; AAA+ lid domain
    NF033609
    Location:266 → 330
    MSCRAMM_ClfA; MSCRAMM family adhesin clumping factor ClfA
    cl38936
    Location:748 → 914
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

  3. XM_003538918.5 → XP_003538966.1  uncharacterized protein LOC100812718 isoform X3

    UniProtKB/TrEMBL
    I1LIT3
    Conserved Domains (3) summary
    pfam17862
    Location:916 → 952
    AAA_lid_3; AAA+ lid domain
    NF033609
    Location:266 → 330
    MSCRAMM_ClfA; MSCRAMM family adhesin clumping factor ClfA
    cl38936
    Location:726 → 892
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

  4. XM_006590744.4 → XP_006590807.1  uncharacterized protein LOC100812718 isoform X2

    Conserved Domains (3) summary
    pfam17862
    Location:919 → 955
    AAA_lid_3; AAA+ lid domain
    NF033609
    Location:266 → 330
    MSCRAMM_ClfA; MSCRAMM family adhesin clumping factor ClfA
    cl38936
    Location:729 → 895
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

  5. XM_041006668.1 → XP_040862602.1  uncharacterized protein LOC100812718 isoform X4

    Conserved Domains (3) summary
    pfam17862
    Location:897 → 933
    AAA_lid_3; AAA+ lid domain
    NF033609
    Location:266 → 330
    MSCRAMM_ClfA; MSCRAMM family adhesin clumping factor ClfA
    cl38936
    Location:707 → 873
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases
Nucleotide Protein
Heading Accession and Version

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