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LOC100812819 protein IWS1 homolog 1 [ Glycine max (soybean) ]

Gene ID: 100812819, updated on 3-Feb-2025

Summary

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Gene symbol
LOC100812819
Gene description
protein IWS1 homolog 1
Locus tag
GLYMA_01G012500v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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Genomic context

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See LOC100812819 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2025_01 current Glycine_max_v4.0 (GCF_000004515.6) 1 NC_016088.4 (1206384..1210967)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 1 NC_016088.3 (1204028..1208607)

Chromosome 1 - NC_016088.4Genomic Context describing neighboring genes Neighboring gene protein AE7 Neighboring gene uncharacterized LOC100810147 Neighboring gene kinesin-like protein KIN-12A Neighboring gene uncharacterized LOC100810158

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in brassinosteroid mediated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription elongation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein IWS1 homolog 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000004515.6-RS_2025_01

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_016088.4 Reference Glycine_max_v4.0 Primary Assembly

    Range
    1206384..1210967
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    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003516869.5 → XP_003516917.1  protein IWS1 homolog 1

    UniProtKB/TrEMBL
    I1J4P0
    Conserved Domains (1) summary
    cl00146
    Location:250 → 481
    TFIIS_I; N-terminal domain (domain I) of transcription elongation factor S-II (TFIIS); similar to a domain found in elongin A and CRSP70; likely to be involved in transcription; domain I from TFIIS interacts with RNA polymerase II holoenzyme
Nucleotide Protein
Heading Accession and Version

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