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LOC100820416 probable inactive receptor-like protein kinase At3g56050 [ Glycine max (soybean) ]

Gene ID: 100820416, updated on 7-Dec-2023

Summary

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Gene symbol
LOC100820416
Gene description
probable inactive receptor-like protein kinase At3g56050
Locus tag
GLYMA_14G057400v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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Genomic context

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See LOC100820416 in Genome Data Viewer
Location:
chromosome: 14
Exon count:
8
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 14 NC_038250.2 (4504228..4508333)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 14 NC_038250.1 (4587961..4592157)

Chromosome 14 - NC_038250.2Genomic Context describing neighboring genes Neighboring gene sister chromatid cohesion 1 protein 1 Neighboring gene uncharacterized protein At3g28850 Neighboring gene sorting and assembly machinery component 50 homolog Neighboring gene LOB domain-containing protein 21

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein phosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable inactive receptor-like protein kinase At3g56050

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_038250.2 Reference Glycine_max_v4.0 Primary Assembly

    Range
    4504228..4508333
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041009248.1 → XP_040865182.1  probable inactive receptor-like protein kinase At3g56050 isoform X1

    UniProtKB/TrEMBL
    I1M7R5
    Conserved Domains (3) summary
    PLN00113
    Location:23 → 157
    PLN00113; leucine-rich repeat receptor-like protein kinase; Provisional
    sd00033
    Location:87 → 105
    LRR_RI; leucine-rich repeat [structural motif]
    cl21453
    Location:392 → 646
    PKc_like; Protein Kinases, catalytic domain

  2. XM_003544015.5 → XP_003544063.2  probable inactive receptor-like protein kinase At3g56050 isoform X2

    UniProtKB/TrEMBL
    I1M7R5
    Conserved Domains (4) summary
    PLN00113
    Location:98 → 619
    PLN00113; leucine-rich repeat receptor-like protein kinase; Provisional
    sd00033
    Location:84 → 105
    LRR_RI; leucine-rich repeat [structural motif]
    pfam08263
    Location:35 → 78
    LRRNT_2; Leucine rich repeat N-terminal domain
    cl21453
    Location:361 → 615
    PKc_like; Protein Kinases, catalytic domain
Nucleotide Protein
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