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LOC100825888 ribulose bisphosphate carboxylase small chain, chloroplastic [ Brachypodium distachyon (stiff brome) ]

Gene ID: 100825888, updated on 6-Apr-2023

Summary

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Gene symbol
LOC100825888
Gene description
ribulose bisphosphate carboxylase small chain, chloroplastic
Locus tag
BRADI_5g04080v3
Gene type
protein coding
RefSeq status
MODEL
Organism
Brachypodium distachyon
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Pooideae; Stipodae; Brachypodieae; Brachypodium
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Genomic context

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See LOC100825888 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
2
Annotation release Status Assembly Chr Location
103 current Brachypodium_distachyon_v3.0 (GCF_000005505.3) 5 NC_016135.3 (5305501..5306895)
102 previous assembly Brachypodium_distachyon_v2.0 (GCF_000005505.2) 5 NC_016135.2 (5305462..5306838)

Chromosome 5 - NC_016135.3Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC104585290 Neighboring gene primary amine oxidase Neighboring gene uncharacterized LOC100828665 Neighboring gene uncharacterized LOC112269483

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Large-scale collection and analysis of full-length cDNAs from Brachypodium distachyon and integration with Pooideae sequence resources. Mochida K, et al. PLoS One, 2013. PMID 24130698, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
ribulose bisphosphate carboxylase small chain, chloroplastic

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Brachypodium distachyon Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Brachypodium_distachyon_v3.0 Primary Assembly

Genomic

  1. NC_016135.3 Reference Brachypodium_distachyon_v3.0 Primary Assembly

    Range
    5305501..5306895
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003581463.4 → XP_003581511.1  ribulose bisphosphate carboxylase small chain, chloroplastic

    UniProtKB/TrEMBL
    I1IWH6
    Conserved Domains (3) summary
    PLN02289
    Location:1 → 168
    PLN02289; ribulose-bisphosphate carboxylase small chain
    cd03527
    Location:58 → 167
    RuBisCO_small; Ribulose bisphosphate carboxylase/oxygenase (Rubisco), small subunit. Rubisco is a bifunctional enzyme catalyzes the initial steps of two opposing metabolic pathways: photosynthetic carbon fixation and the competing process of photorespiration. Rubisco ...
    pfam12338
    Location:8 → 30
    RbcS; Ribulose-1,5-bisphosphate carboxylase small subunit
Nucleotide Protein Strain
Heading Accession and Version

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