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LOC100830144 probable polygalacturonase [ Brachypodium distachyon (stiff brome) ]

Gene ID: 100830144, updated on 9-Nov-2023

Summary

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Gene symbol
LOC100830144
Gene description
probable polygalacturonase
Locus tag
BRADI_4g33660v3
Gene type
protein coding
RefSeq status
MODEL
Organism
Brachypodium distachyon
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Pooideae; Stipodae; Brachypodieae; Brachypodium
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Genomic context

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See LOC100830144 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
3
Annotation release Status Assembly Chr Location
103 current Brachypodium_distachyon_v3.0 (GCF_000005505.3) 4 NC_016134.3 (39265407..39268190, complement)
102 previous assembly Brachypodium_distachyon_v2.0 (GCF_000005505.2) 4 NC_016134.2 (39447718..39450475, complement)

Chromosome 4 - NC_016134.3Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100822798 Neighboring gene uncharacterized LOC100823109 Neighboring gene uncharacterized LOC112268810 Neighboring gene transcription factor bHLH130

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables polygalacturonase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable polygalacturonase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Brachypodium distachyon Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Brachypodium_distachyon_v3.0 Primary Assembly

Genomic

  1. NC_016134.3 Reference Brachypodium_distachyon_v3.0 Primary Assembly

    Range
    39265407..39268190 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003576628.4 → XP_003576676.1  probable polygalacturonase

    UniProtKB/TrEMBL
    A0A0Q3ETA3, I1IR86
    Conserved Domains (1) summary
    cl19188
    Location:164 → 383
    PL-6; Polysaccharide Lyase Family 6
Nucleotide Protein Strain
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