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LOC100836182 6-phosphogluconate dehydrogenase, decarboxylating 1 [ Brachypodium distachyon (stiff brome) ]

Gene ID: 100836182, updated on 9-Nov-2023

Summary

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Gene symbol
LOC100836182
Gene description
6-phosphogluconate dehydrogenase, decarboxylating 1
Locus tag
BRADI_1g50220v3
Gene type
protein coding
RefSeq status
MODEL
Organism
Brachypodium distachyon
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Pooideae; Stipodae; Brachypodieae; Brachypodium
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Genomic context

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See LOC100836182 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
2
Annotation release Status Assembly Chr Location
103 current Brachypodium_distachyon_v3.0 (GCF_000005505.3) 1 NC_016131.3 (49034618..49037795, complement)
102 previous assembly Brachypodium_distachyon_v2.0 (GCF_000005505.2) 1 NC_016131.2 (49107424..49110597, complement)

Chromosome 1 - NC_016131.3Genomic Context describing neighboring genes Neighboring gene avenin-like a5 Neighboring gene putative acyl-activating enzyme 19 Neighboring gene extra-large guanine nucleotide-binding protein 3 Neighboring gene probable ATP-dependent helicase PF08_0048

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables NADP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables phosphogluconate dehydrogenase (decarboxylating) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in D-gluconate catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in pentose-phosphate shunt IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in pentose-phosphate shunt, oxidative branch IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
6-phosphogluconate dehydrogenase, decarboxylating 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Brachypodium distachyon Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Brachypodium_distachyon_v3.0 Primary Assembly

Genomic

  1. NC_016131.3 Reference Brachypodium_distachyon_v3.0 Primary Assembly

    Range
    49034618..49037795 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003557102.3 → XP_003557150.1  6-phosphogluconate dehydrogenase, decarboxylating 1

    UniProtKB/TrEMBL
    I1H1C2
    Conserved Domains (3) summary
    PLN02350
    Location:1 → 477
    PLN02350; phosphogluconate dehydrogenase (decarboxylating)
    pfam00393
    Location:182 → 471
    6PGD; 6-phosphogluconate dehydrogenase, C-terminal domain
    pfam03446
    Location:4 → 178
    NAD_binding_2; NAD binding domain of 6-phosphogluconate dehydrogenase
Nucleotide Protein Strain
Heading Accession and Version

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Molecular Biology Databases